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The ability of large language models (LLMs) to follow instructions is crucial for their practical applications, yet the underlying mechanisms remain poorly understood. This paper presents a novel framework that leverages sparse autoencoders…

Machine Learning · Computer Science 2025-02-18 Zirui He , Haiyan Zhao , Yiran Qiao , Fan Yang , Ali Payani , Jing Ma , Mengnan Du

Sparse autoencoders (SAEs) are a mechanistic interpretability technique that have been used to provide insight into learned concepts within large protein language models. Here, we employ TopK and Ordered SAEs to investigate autoregressive…

Autoencoders have been used for finding interpretable and disentangled features underlying neural network representations in both image and text domains. While the efficacy and pitfalls of such methods are well-studied in vision, there is a…

Machine Learning · Computer Science 2025-02-06 Abhinav Menon , Manish Shrivastava , David Krueger , Ekdeep Singh Lubana

Sparse autoencoders (SAEs) are used to disentangle the dense, polysemantic internal representations of large language models (LLMs) into interpretable, monosemantic concepts. However, standard $\ell_1$-regularized SAEs suffer from feature…

Machine Learning · Computer Science 2026-05-08 Faris Chaudhry , Keisuke Yano , Anthea Monod

Sparse autoencoders (SAEs) aim to disentangle model activations into monosemantic, human-interpretable features. In practice, learned features are often redundant and vary across training runs and sparsity levels, which makes…

Machine Learning · Computer Science 2026-01-01 Cristina P. Martin-Linares , Jonathan P. Ling

While sparse autoencoders (SAEs) have generated significant excitement, a series of negative results have added to skepticism about their usefulness. Here, we establish a conceptual distinction that reconciles competing narratives…

Machine Learning · Computer Science 2025-07-01 Kenny Peng , Rajiv Movva , Jon Kleinberg , Emma Pierson , Nikhil Garg

Sparse Autoencoders (SAEs) are widely used to interpret neural networks by identifying meaningful concepts from their representations. However, do SAEs truly uncover all concepts a model relies on, or are they inherently biased toward…

Machine Learning · Computer Science 2025-12-03 Sai Sumedh R. Hindupur , Ekdeep Singh Lubana , Thomas Fel , Demba Ba

Mixture of Experts (MoE) has become a mainstream architecture for building Large Language Models (LLMs) by reducing per-token computation while enabling model scaling. It can be viewed as partitioning a large Feed-Forward Network (FFN) at…

Machine Learning · Computer Science 2025-08-27 Weilin Cai , Le Qin , Shwai He , Junwei Cui , Ang Li , Jiayi Huang

Sparse dictionary learning (and, in particular, sparse autoencoders) attempts to learn a set of human-understandable concepts that can explain variation on an abstract space. A basic limitation of this approach is that it neither exploits…

Computation and Language · Computer Science 2025-06-03 Mark Muchane , Sean Richardson , Kiho Park , Victor Veitch

Predicting protein function from amino acid sequence remains a central challenge in data-scarce (low-$N$) regimes, limiting machine learning-guided protein design when only small amounts of assay-labeled sequence-function data are…

Machine Learning · Computer Science 2025-08-27 Darin Tsui , Kunal Talreja , Amirali Aghazadeh

Sparse autoencoders (SAEs) are a promising approach for uncovering interpretable features in large language models (LLMs). While several automated evaluation methods exist for SAEs, most rely on external LLMs. In this work, we introduce…

Computation and Language · Computer Science 2025-09-30 Alex Gulko , Yusen Peng , Sachin Kumar

Dense embeddings deliver strong retrieval performance but often lack interpretability and controllability. This paper introduces a novel approach using sparse autoencoders (SAE) to interpret and control dense embeddings via the learned…

Information Retrieval · Computer Science 2025-02-25 Hao Kang , Tevin Wang , Chenyan Xiong

Unlearning methods for vision-language models (VLMs) have primarily adapted techniques from large language models (LLMs), relying on weight updates that demand extensive annotated forget sets. Moreover, these methods perform unlearning at a…

Computer Vision and Pattern Recognition · Computer Science 2025-03-21 Qing Li , Jiahui Geng , Derui Zhu , Fengyu Cai , Chenyang Lyu , Fakhri Karray

Existing works are dedicated to untangling atomized numerical components (features) from the hidden states of Large Language Models (LLMs). However, they typically rely on autoencoders constrained by some training-time regularization on…

Machine Learning · Computer Science 2026-02-13 Hakaze Cho , Haolin Yang , Yanshu Li , Brian M. Kurkoski , Naoya Inoue

Sparse autoencoders (SAEs) decompose language model activations into interpretable features, but existing methods reveal only which features activate, not which change model outputs when amplified. We introduce Control Reinforcement…

Machine Learning · Computer Science 2026-05-05 Seonglae Cho , Zekun Wu , Adriano Koshiyama

Sparse autoencoders (SAEs) have been successfully used to discover sparse and human-interpretable representations of the latent activations of LLMs. However, we would ultimately like to understand the computations performed by LLMs and not…

Machine Learning · Computer Science 2025-06-09 Lucy Farnik , Tim Lawson , Conor Houghton , Laurence Aitchison

This paper introduces an efficient and robust method for discovering interpretable circuits in large language models using discrete sparse autoencoders. Our approach addresses key limitations of existing techniques, namely computational…

Computation and Language · Computer Science 2024-05-22 Charles O'Neill , Thang Bui

While sparse autoencoders (SAEs) successfully extract interpretable features from language models, applying them to audio generation faces unique challenges: audio's dense nature requires compression that obscures semantic meaning, and…

Machine Learning · Computer Science 2025-10-31 Nathan Paek , Yongyi Zang , Qihui Yang , Randal Leistikow

Reinforcement learning (RL) is a key post-pretraining step for aligning large language models (LLMs) with complex tasks and human preferences. While it is often assumed that RL fine-tuning requires updating most of a model's parameters, we…

Machine Learning · Computer Science 2025-07-30 Andrii Balashov

As large language models (LLMs) are increasingly deployed in real-world applications, the need to selectively remove unwanted knowledge while preserving model utility has become paramount. Recent work has explored sparse autoencoders (SAEs)…

Computation and Language · Computer Science 2026-04-28 Tomer Ashuach , Dana Arad , Aaron Mueller , Martin Tutek , Yonatan Belinkov