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The rapid expansion of medical literature presents growing challenges for structuring and integrating domain knowledge at scale. Knowledge Graphs (KGs) offer a promising solution by enabling efficient retrieval, automated reasoning, and…

Computation and Language · Computer Science 2025-08-20 Duzhen Zhang , Zixiao Wang , Zhong-Zhi Li , Yahan Yu , Shuncheng Jia , Jiahua Dong , Haotian Xu , Xing Wu , Yingying Zhang , Tielin Zhang , Jie Yang , Xiuying Chen , Le Song

Antimicrobial resistance (AMR) poses a global health threat, reducing the effectiveness of antibiotics and complicating clinical decision-making. To address this challenge, we introduce abx_amr_simulator, a Python-based simulation package…

Machine Learning · Computer Science 2026-03-13 Joyce Lee , Seth Blumberg

Access to the most up-to-date information on medical countermeasures is important for the research and development of effective treatments for viruses and marine toxins. However, there is a lack of comprehensive databases that curate data…

Artificial Intelligence · Computer Science 2026-04-01 Hung N. Do , Jessica Z. Kubicek-Sutherland , S. Gnanakaran

During times of increasing antibiotic resistance and the spread of infectious diseases like COVID-19, it is important to classify genes related to antibiotic resistance. As natural language processing has advanced with transformer-based…

Computation and Language · Computer Science 2024-01-02 Hyunwoo Yoo , Bahrad Sokhansanj , James R. Brown , Gail Rosen

Large language models (LLMs) hold promise for sustainable manufacturing, but often hallucinate industrial codes and emission factors, undermining regulatory and investment decisions. We introduce CircuGraphRAG, a retrieval-augmented…

This paper proposes a large language model (LLM) approach that integrates graph-structured information for knowledge reasoning in tobacco pest and disease control. Built upon the GraphRAG framework, the proposed method enhances knowledge…

Computation and Language · Computer Science 2025-12-29 Siyu Li , Chenwei Song , Wan Zhou , Xinyi Liu

Large language models (LLMs) have demonstrated strong capabilities in medical question answering; however, purely parametric models often suffer from knowledge gaps and limited factual grounding. Retrieval-augmented generation (RAG)…

Computation and Language · Computer Science 2026-04-09 Nusrat Sultana , Abdullah Muhammad Moosa , Kazi Afzalur Rahman , Sajal Chandra Banik

In recent years, the introduction of knowledge graphs (KGs) has significantly advanced recommender systems by facilitating the discovery of potential associations between items. However, existing methods still face several limitations.…

Information Retrieval · Computer Science 2025-04-18 Ziqiang Cui , Yunpeng Weng , Xing Tang , Fuyuan Lyu , Dugang Liu , Xiuqiang He , Chen Ma

Large Language Models (LLMs), although powerful in general domains, often perform poorly on domain-specific tasks such as medical question answering (QA). In addition, LLMs tend to function as "black-boxes", making it challenging to modify…

Computation and Language · Computer Science 2024-08-19 Yucheng Shi , Shaochen Xu , Tianze Yang , Zhengliang Liu , Tianming Liu , Quanzheng Li , Xiang Li , Ninghao Liu

The parallel evolution of Large Language Models (LLMs) with advanced code-understanding capabilities and the increasing sophistication of malware presents a new frontier for cybersecurity research. This paper evaluates the efficacy of…

Cryptography and Security · Computer Science 2026-01-15 Aniesh Chawla , Udbhav Prasad

Large Language Models (LLMs) have significantly advanced medical question-answering by leveraging extensive clinical data and medical literature. However, the rapid evolution of medical knowledge and the labor-intensive process of manually…

Computation and Language · Computer Science 2025-07-01 Mohammad Reza Rezaei , Reza Saadati Fard , Jayson L. Parker , Rahul G. Krishnan , Milad Lankarany

Properly handling missing data is a fundamental challenge in recommendation. Most present works perform negative sampling from unobserved data to supply the training of recommender models with negative signals. Nevertheless, existing…

Information Retrieval · Computer Science 2020-03-13 Xiang Wang , Yaokun Xu , Xiangnan He , Yixin Cao , Meng Wang , Tat-Seng Chua

Antimicrobial resistance (AMR) is a growing global crisis projected to cause 10 million deaths per year by 2050. While the WHO Global Antimicrobial Resistance and Use Surveillance System (GLASS) provides standardized surveillance data…

Machine Learning · Computer Science 2026-02-27 Md Tanvir Hasan Turja

Knowledge Graphs (KGs) store structured factual knowledge by linking entities through relationships, crucial for many applications. These applications depend on the KG's factual accuracy, so verifying facts is essential, yet challenging.…

Databases · Computer Science 2026-02-12 Farzad Shami , Stefano Marchesin , Gianmaria Silvello

The increasing complexity of clinical decision-making, alongside the rapid expansion of electronic health records (EHR), presents both opportunities and challenges for delivering data-informed care. This paper proposes a clinical decision…

Artificial Intelligence · Computer Science 2025-10-03 Leon Garza , Anantaa Kotal , Michael A. Grasso , Emre Umucu

Arguments are a fundamental aspect of human reasoning, in which claims are supported, challenged, and weighed against one another. We present an end-to-end large language model (LLM)-based system for reconstructing arguments from natural…

Computation and Language · Computer Science 2026-05-20 Paulo Pirozelli , Victor Hugo Nascimento Rocha , Fabio G. Cozman , Douglas Aldred

New technologies in generative AI can enable deeper analysis into our nation's supply chains but truly informative insights require the continual updating and aggregation of massive data in a timely manner. Large Language Models (LLMs)…

Large Language Models (LLMs) struggle with the complex, multi-modal, and network-native data underlying financial risk. Standard Retrieval-Augmented Generation (RAG) oversimplifies relationships, while specialist models are costly and…

Artificial Intelligence · Computer Science 2025-12-17 Evan Heus , Rick Bookstaber , Dhruv Sharma

Agentic systems for drug discovery have demonstrated autonomous synthesis planning, literature mining, and molecular design. We ask how well they generalize. Evaluating six frameworks against 15 task classes drawn from peptide therapeutics,…

Quantitative Methods · Quantitative Biology 2026-02-12 Edward Wijaya

In today's rapidly evolving landscape of Artificial Intelligence, large language models (LLMs) have emerged as a vibrant research topic. LLMs find applications in various fields and contribute significantly. Despite their powerful language…

Computation and Language · Computer Science 2024-09-10 Tuan Bui , Oanh Tran , Phuong Nguyen , Bao Ho , Long Nguyen , Thang Bui , Tho Quan
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