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Predicting relative risk (RR) of spatial clusters is a complex task in public health that can be achieved through various statistical and machine-learning methods for different time intervals. However, high-resolution longitudinal data is…

Methodology · Statistics 2025-12-23 Lyza Iamrache , Kamel Rekab , Majid Bani-Yagoub , Julia Pluta , Abdelghani Mehailia

Methicillin-resistant Staphylococcus aureus (MRSA) is a critical public health threat within hospitals as well as long-term care facilities. Better understanding of MRSA risks, evaluation of interventions and forecasting MRSA rates are…

Machine Learning · Computer Science 2025-08-20 Rituparna Datta , Jiaming Cui , Gregory R. Madden , Anil Vullikanti

Two crucial elements facilitate the understanding and control of communicable disease spread within a social setting. These components are, the underlying contact structure among individuals that determines the pattern of disease…

Populations and Evolution · Quantitative Biology 2013-05-29 Pierre-Andre Noel , Bahman Davoudi , Louis J. Dube , Robert C. Brunham , Babak Pourbohloul

Assessing the risk of epidemic spread on networks and developing strategies for its containment is of tremendous practical importance, both due to direct effects in public health and its impact on economies. In this work we present the…

Populations and Evolution · Quantitative Biology 2019-12-16 Jason Bassett , Pascal Blunk , Jörn Gethmann , Franz J. Conrath , Philipp Hövel

We discuss various models for epidemics on networks that rely on Markov chains. Random walks on graphs are often used to predict epidemic spread and to investigate possible control actions to mitigate them. In this study, we demonstrate…

Physics and Society · Physics 2022-07-07 Sooyeong Kim , Jane Breen , Ekaterina Dudkina , Federico Poloni , Emanuele Crisostomi

The rapid worldwide spread of the severe acute respiratory syndrome (SARS) demonstrated the potential threat an infectious disease poses in a closely interconnected and interdependent world. Here we introduce a probabilistic model which…

Disordered Systems and Neural Networks · Physics 2009-11-10 L. Hufnagel , D. Brockmann , T. Geisel

In this paper we study a nonlinear reaction-diffusion system which models an infectious disease caused by bacteria such as those for cholera. One of the significant features in this model is that a certain portion of the recovered human…

Analysis of PDEs · Mathematics 2022-02-01 Hong-Ming Yin , Jun Zou

This paper studies forecasting of the future distribution of events in human action sequences, a task essential in domains like retail, finance, healthcare, and recommendation systems where the precise temporal order is often less critical…

Machine Learning · Computer Science 2025-10-08 Egor Surkov , Dmitry Osin , Evgeny Burnaev , Egor Shvetsov

In this paper, we address technical difficulties that arise when applying Markov chain Monte Carlo (MCMC) to hierarchical models designed to perform clustering in the space of latent parameters of subject-wise generative models.…

Quantitative Methods · Quantitative Biology 2020-12-15 Yu Yao , Klaas E. Stephan

This paper proposes a sequential ensemble methodology for epidemic modeling that integrates discrete-time Hawkes processes (DTHP) and Susceptible-Exposed-Infectious-Removed (SEIR) models. Motivated by the need for accurate and reliable…

Applications · Statistics 2026-01-21 Dhorasso Temfack , Jason Wyse

Understanding the impact of collective social phenomena in epidemic dynamics is a crucial task to effectively contain the disease spread. In this work we build a mathematical description for assessing the interplay between opinion…

Physics and Society · Physics 2023-03-10 Mattia Zanella

The dynamics of infection spread in populations has received popular attention since the outbreak of Covid-19 and many statistical models have been developed. One of the interesting areas of research is short-time dynamics in confined,…

Physics and Society · Physics 2025-01-22 Rahul Sheshanarayana , Prateek K. Jha

Approaches to the calculation of the full state vector of a larger epidemiological model for the spread of COVID-19 in Sweden at the initial time instant from available data and with a simplified dynamical model are proposed and evaluated.…

Systems and Control · Electrical Eng. & Systems 2020-07-20 Håkan Runvik , Alexander Medvedev , Robin Eriksson , Stefan Engblom

We consider a metapopulation model of cholera describing explicitly the movement of individuals and contaminated water between locations as well as a simple vaccination mechanism. The global stability of the disease-free equilibrium point…

Populations and Evolution · Quantitative Biology 2025-05-26 Abdramane Annour Saad , Julien Arino , Patrick M Tchepmo Djomegni , Mahamat S Daoussa Haggar

The development of an intelligent agricultural decision-supporting system for crop selection and disease forecasting in Bangladesh is the main objective of this work. The economy of the nation depends heavily on agriculture. However,…

Machine Learning · Computer Science 2024-03-29 Forkan Uddin Ahmed , Annesha Das , Md Zubair

Mutations sometimes increase contagiousness for evolving pathogens. During an epidemic, scientists use viral genome data to infer a shared evolutionary history and connect this history to geographic spread. We propose a model that directly…

Populations and Evolution · Quantitative Biology 2021-09-14 Andrew J. Holbrook , Xiang Ji , Marc A. Suchard

Mathematical models are formal and simplified representations of the knowledge related to a phenomenon. In classical epidemic models, a neglected aspect is the heterogeneity of disease transmission and progression linked to the viral load…

Physics and Society · Physics 2022-05-10 Rossella Della Marca , Nadia Loy , Andrea Tosin

This research presents an advanced fractional-order compartmental model designed to delve into the complexities of COVID-19 transmission dynamics, specifically accounting for the influence of environmental pathogens on disease spread. By…

Populations and Evolution · Quantitative Biology 2024-07-09 Moein Khalighi , Faïçal Ndaïrou , Leo Lahti

We consider robustness to distribution shifts in the context of diagnostic models in healthcare, where the prediction target $Y$, e.g., the presence of a disease, is causally upstream of the observations $X$, e.g., a biomarker. Distribution…

This paper develops mathematical tools to estimate seasonal changes in measles transmission rates and corresponding variation in population susceptibility. The tools are designed to leverage times series of cases in the absence of…

Populations and Evolution · Quantitative Biology 2024-05-17 Niket Thakkar , Sonia Jindal , Katherine Rosenfeld