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We consider connectivity augmentation problems in the Steiner setting, where the goal is to augment the edge-connectivity between a specified subset of terminal nodes. In the Steiner Augmentation of a Graph problem ($k$-SAG), we are given a…

Data Structures and Algorithms · Computer Science 2024-08-12 Daniel Hathcock , Michael Zlatin

In this paper we present GeoThinneR, an R package for efficient and flexible spatial thinning of species occurrence data. Spatial thinning is a widely used preprocessing step in species distribution modeling (SDM) that can help reduce…

Populations and Evolution · Quantitative Biology 2025-05-14 J. Mestre-Tomás

Choi et. al (2011) introduced a minimum spanning tree (MST)-based method called CLGrouping, for constructing tree-structured probabilistic graphical models, a statistical framework that is commonly used for inferring phylogenetic trees.…

Combinatorics · Mathematics 2017-01-12 Prabhav Kalaghatgi , Thomas Lengauer

Minimum Spanning Tree (MST) is an important graph algorithm that has wide ranging applications in the areas of computer networks, VLSI routing, wireless communications among others. Today virtually every computer is built out of multi-core…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-15 Suryanarayana Murthy Durbhakula

We consider the problem of finding minimum-link rectilinear paths in rectilinear polygonal domains in the plane. A path or a polygon is rectilinear if all its edges are axis-parallel. Given a set $\mathcal{P}$ of $h$ pairwise-disjoint…

Computational Geometry · Computer Science 2015-04-28 Joseph S. B. Mitchell , Valentin Polishchuk , Mikko Sysikaski , Haitao Wang

We consider a multistage framework introduced recently where, given a time horizon t=1,2,...,T, the input is a sequence of instances of a (static) combinatorial optimization problem I_1,I_2,...,I_T, (one for each time step), and the goal is…

Data Structures and Algorithms · Computer Science 2019-09-24 Evripidis Bampis , Bruno Escoffier , Alexander Kononov

Least squares estimation, a regression technique based on minimisation of residuals, has been invaluable in bringing the best fit solutions to parameters in science and engineering. However, in dynamic environments such as in Geomatics…

Computational Engineering, Finance, and Science · Computer Science 2018-04-17 C. P. E. Agbachi

Iterative rounding and relaxation have arguably become the method of choice in dealing with unconstrained and constrained network design problems. In this paper we extend the scope of the iterative relaxation method in two directions: (1)…

Data Structures and Algorithms · Computer Science 2015-05-18 Nikhil Bansal , Rohit Khandekar , Jochen Konemann , Viswanath Nagarajan , Britta Peis

Range Minimum Query (RMQ) is an important building brick of many compressed data structures and string matching algorithms. Although this problem is essentially solved in theory, with sophisticated data structures allowing for constant time…

Data Structures and Algorithms · Computer Science 2017-07-12 Szymon Grabowski , Tomasz Kowalski

We consider two natural variants of the problem of minimum spanning tree (MST) of a graph in the parallel setting: MST verification (verifying if a given tree is an MST) and the sensitivity analysis of an MST (finding the lowest cost…

Data Structures and Algorithms · Computer Science 2024-08-02 Sam Coy , Artur Czumaj , Gopinath Mishra , Anish Mukherjee

The shortest augmenting path technique is one of the fundamental ideas used in maximum matching and maximum flow algorithms. Since being introduced by Edmonds and Karp in 1972, it has been widely applied in many different settings.…

Discrete Mathematics · Computer Science 2017-12-21 Bartłomiej Bosek , Dariusz Leniowski , Piotr Sankowski , Anna Zych-Pawlewicz

As the basic model for very large scale integration (VLSI) routing, the Steiner minimal tree (SMT) can be used in various practical problems, such as wire length optimization, congestion, and time delay estimation. In this paper, a novel…

Neural and Evolutionary Computing · Computer Science 2018-11-27 Genggeng Liu , Zhen Zhuang , Wenzhong Guo , Naixue Xiong , Guolong Chen

We consider the RMS distance (sum of squared distances between pairs of points) under translation between two point sets in the plane, in two different setups. In the partial-matching setup, each point in the smaller set is matched to a…

Computational Geometry · Computer Science 2014-11-27 Rinat Ben-Avraham , Matthias Henze , Rafel Jaume , Balázs Keszegh , Orit E. Raz , Micha Sharir , Igor Tubis

Short spanning trees subject to additional constraints are important building blocks in various approximation algorithms. Especially in the context of the Traveling Salesman Problem (TSP), new techniques for finding spanning trees with…

Data Structures and Algorithms · Computer Science 2023-09-13 Martin Nägele , Rico Zenklusen

We present a reduction of Milestoning (ReM) algorithm to analyze the high-dimensional Milestoning kinetic network. The algorithm reduces the Milestoning network to low dimensions but preserves essential kinetic information, such as local…

Chemical Physics · Physics 2024-10-08 Ru Wang , Xiaojun Ji , Hao Wang , Wenjian Liu

This paper considers the \textit{minimum spanning tree (MST)} problem in the Congested Clique model and presents an algorithm that runs in $O(\log \log \log n)$ rounds, with high probability. Prior to this, the fastest MST algorithm in this…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-12-09 Sriram V. Pemmaraju , Vivek B. Sardeshmukh

In the Group Steiner Tree problem (GST), we are given a (vertex or edge)-weighted graph $G=(V,E)$ on $n$ vertices, a root vertex $r$ and a collection of groups $\{S_i\}_{i\in[h]}: S_i\subseteq V(G)$. The goal is to find a min-cost subgraph…

Data Structures and Algorithms · Computer Science 2018-03-01 Parinya Chalermsook , Syamantak Das , Guy Even , Bundit Laekhanukit , Daniel Vaz

Algorithms for dynamically maintaining minimum spanning trees (MSTs) have received much attention in both the parallel and sequential settings. While previous work has given optimal algorithms for dense graphs, all existing parallel…

Data Structures and Algorithms · Computer Science 2020-10-27 Daniel Anderson , Guy E. Blelloch , Kanat Tangwongsan

The online (uniform) buy-at-bulk network design problem asks us to design a network, where the edge-costs exhibit economy-of-scale. Previous approaches to this problem used tree- embeddings, giving us randomized algorithms. Moreover, the…

Data Structures and Algorithms · Computer Science 2016-11-02 Anupam Gupta , R. Ravi , Kunal Talwar , Seeun William Umboh

The Minimum Linear Arrangement problem (MLA) consists of finding a mapping $\pi$ from vertices of a graph to distinct integers that minimizes $\sum_{\{u,v\}\in E}|\pi(u) - \pi(v)|$. In that setting, vertices are often assumed to lie on a…

Data Structures and Algorithms · Computer Science 2025-11-05 Lluís Alemany-Puig , Juan Luis Esteban , Ramon Ferrer-i-Cancho
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