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Diffusion-limited association reactions are ubiquitous in nature. They are particularly important for biological reactions, where the reaction rates are often determined by the diffusive transport of the molecules on two-dimensional…

Soft Condensed Matter · Physics 2020-10-06 Sumantra Sarkar

The reaction-diffusion master equation (RDME) is commonly used to model processes where both the spatial and stochastic nature of chemical reactions need to be considered. We show that the RDME in many cases is inconsistent with a…

Quantitative Methods · Quantitative Biology 2009-05-29 Paul Sjoberg , Otto G Berg , Johan Elf

The stationary-state spatial structure of reacting scalar fields, chaotically advected by a two-dimensional large-scale flow, is examined for the case for which the reaction equations contain delay terms. Previous theoretical investigations…

Fluid Dynamics · Physics 2015-05-13 Alexandra Tzella , Peter H. Haynes

An important input into reaction theory is the density of states or the level density. Spectral distribution theory (also known as nuclear statistical spectroscopy) characterizes the secular behavior of the density of states through moments…

Nuclear Theory · Physics 2015-06-26 Edgar Teran , Calvin W. Johnson

In this paper, we study stochastic homogenization of a coupled diffusion-reaction system. The diffusion-reaction system is coupled to stochastic differential equations, which govern the changes in the media properties. Though homogenization…

Probability · Mathematics 2018-10-18 Hakima Bessaih , Yalchin Efendiev , Razvan Florian Maris

Many physical systems are described by probability distributions that evolve in both time and space. Modeling these systems is often challenging to due large state space and analytically intractable or computationally expensive dynamics. To…

Biological Physics · Physics 2019-07-03 Oliver K. Ernst , Tom Bartol , Terrence Sejnowski , Eric Mjolsness

Diffusion behaviors of heterogeneous materials are of paramount importance in many engineering problems. Numerical models that take into account the internal structure of such materials are robust but computationally very expensive. This…

Numerical Analysis · Mathematics 2023-12-18 Jan Eliáš , Hao Yin , Gianluca Cusatis

In this paper, we study a numerical approximation for a class of stationary states for reaction-diffusion system with m densities having disjoint support, which are governed by a minimization problem. We use quantitative properties of both…

Numerical Analysis · Mathematics 2014-05-09 Avetik Arakelyan , Farid Bozorgnia

We develop a framework describing the dynamics and thermodynamics of open non-ideal reaction-diffusion systems, which embodies Flory-Huggins theories of mixtures and chemical reaction network theories. Our theory elucidates the mechanisms…

Molecular Networks · Quantitative Biology 2024-12-05 Francesco Avanzini , Timur Aslyamov , Étienne Fodor , Massimiliano Esposito

We introduce a simple nonequilibrium model for a driven diffusive system with nonconservative reaction kinetics which exhibits ergodicity breaking and hysteresis in one dimension. These phenomena can be understood through a description of…

Statistical Mechanics · Physics 2009-11-10 A. Rakos , M. Paessens , G. M. Schuetz

Subdiffusion has been proposed as an explanation of various kinetic phenomena inside living cells. In order to fascilitate large-scale computational studies of subdiffusive chemical processes, we extend a recently suggested mesoscopic model…

Analysis of PDEs · Mathematics 2018-02-19 Emilie Blanc , Stefan Engblom , Andreas Hellander , Per Lötstedt

This paper presents estimates of the convergence of asymptotic dynamics of reaction-diffusion equations with nonlinear boundary conditions. We show how the convergence of the global attractors can be affected by the variations of diffusion…

Analysis of PDEs · Mathematics 2024-05-15 Flank D. M. Bezerra , Marcone C. Pereira , Leonardo Pires

Cross-diffusion systems play a central role in mathematical modelling, in which density-dependent dispersal and multiscale mechanisms can lead to spatial segregation and diffusion-driven instabilities. In several relevant examples,…

Analysis of PDEs · Mathematics 2026-03-24 Brocchieri Elisabetta , Soresina Cinzia

Material balance equations describe the dynamics of the species in open reaction systems and contain information regarding reaction topology, kinetics and operation mode. For reaction systems, the state variables (the numbers of moles, or…

Systems and Control · Computer Science 2015-11-23 Nirav Bhatt , Sriniketh Srinivasan

In networks of nonlinear oscillators, symmetries place hard constraints on the system that can be exploited to predict universal dynamical features and steady-states, providing a rare generic organizing principle for far-from-equilibrium…

Pattern Formation and Solitons · Physics 2021-03-02 Ian Hunter , Michael M. Norton , Bolun Chen , Chris Simonetti , Maria Eleni Moustaka , Jonathan Touboul , Seth Fraden

We propose a mathematical model, namely a reaction-diffusion system, to describe social behaviour of cockroaches. An essential new aspect in our model is that the dispersion behaviour due to overcrowding effect is taken into account {as a…

Analysis of PDEs · Mathematics 2021-11-16 Jan Elias , Hirofumi Izuhara , Masayasu Mimura , Bao Quoc Tang

A reaction-kinetic model for a two-species gas mixture undergoing pair generation and recombination reactions is considered on a flat torus. For dominant scattering with a non-moving constant-temperature background the macroscopic limit to…

Analysis of PDEs · Mathematics 2023-08-07 Gianluca Favre , Marlies Pirner , Christian Schmeiser

Kinetically-constrained models are lattice-gas models that are used for describing glassy systems. By construction, their equilibrium state is trivial and there are no equal-time correlations between the occupancy of different sites. We…

Statistical Mechanics · Physics 2017-03-01 Eial Teomy , Yair Shokef

In this paper we consider the Shigesada-Kawasaki-Teramoto (SKT) model to account for stable inhomogeneous steady states exhibiting spatial segregation, which describe a situation of coexistence of two competing species. We provide a deeper…

Analysis of PDEs · Mathematics 2019-10-09 Maxime Breden , Christian Kuehn , Cinzia Soresina

This paper studies how patterns derived from a system of reaction-diffusion equations may vary significantly depending upon boundary and initial conditions, as well as in the spatial dependence of the coefficients involved. From an…

Subcellular Processes · Quantitative Biology 2016-01-06 Aldo Ledesma-Durán , Héctor Juárez-Valencia , Iván Santamaría-Holek