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We study the spreading of excitations in 2D systems of mobile agents where the excitation is transmitted when a quiescent agent keeps contact with an excited one during a non-vanishing time. We show that the steady states strongly depend on…

Populations and Evolution · Quantitative Biology 2009-11-13 Fernando Peruani , Gustavo J. Sibona

Smoothed dissipative particle dynamics (SDPD) is a widely used particle-based method for modelling soft matter systems at mesoscopic and macroscopic scales, offering thermodynamic consistency and direct control over the fluid's transport…

Fluid Dynamics · Physics 2025-10-22 Marina Echeverria Ferrero , Nicolas Moreno , Marco Ellero

RNA viruses are known to replicate with extremely high mutation rates. These rates are actually close to the so-called error threshold. This threshold is in fact a critical point beyond which genetic information is lost through a…

Statistical Mechanics · Physics 2009-11-07 Romualdo Pastor-Satorras , Ricard V. Sole

Interest in the dynamical arrest leading to a fluid --> solid transition in thermal and athermal systems has led to questions about the nature of these transitions. These jamming transitions may be dependent on the influence of extended…

Soft Condensed Matter · Physics 2007-05-23 Allison Ferguson , Bulbul Chakraborty

Two phase solid-fluid mixture models are ubiquitous in biological applications. For instance, models for growth of tissues and biofilms combine time dependent and quasi-stationary boundary value problems set in domains whose boundary moves…

Analysis of PDEs · Mathematics 2024-01-17 Ana Carpio , Gema Duro

Coupling diffusion process of signaling molecules with nonlinear interactions of intracellular processes and cellular growth/transformation leads to a system of reaction-diffusion equations coupled with ordinary differential equations…

Analysis of PDEs · Mathematics 2013-11-08 Anna Marciniak-Czochra , Madoka Nakayama , Izumi Takagi

A hybrid mesoscopic multi-particle collision model is used to study diffusion-influenced reaction kinetics. The mesoscopic particle dynamics conserves mass, momentum and energy so that hydrodynamic effects are fully taken into account.…

Chemical Physics · Physics 2007-05-23 Kay Tucci , Raymond Kapral

Mathematical modeling is now used commonly in the analysis of signaling networks. With advances in high resolution microscopy, the spatial location of different signaling molecules and the spatio-temporal dynamics of signaling microdomains…

Subcellular Processes · Quantitative Biology 2016-07-26 Jasmine Nirody , Padmini Rangamani

In this paper, we study the dynamics of a two-species competition model with two different free boundaries in heterogeneous time-periodic environment, where the two species adopt a combination of random movement and advection upward or…

Analysis of PDEs · Mathematics 2015-11-26 Qiaoling Chen , Fengquan Li , Feng Wang

We propose a class of nonlocal diffusion systems on time-varying domains, and fully characterize their asymptotic dynamics in the asymptotically fixed, time-periodic and unbounded cases. The kernel is not necessarily symmetric or compactly…

Analysis of PDEs · Mathematics 2025-02-11 Xiandong Lin , Hailong Ye , Xiao-Qiang Zhao

In this article we study a reaction diffusion system with $m$ unknown concentration. The non-linearity in our study comes from an underlying reversible chemical reaction and triangular in nature. Our objective is to understand the large…

Analysis of PDEs · Mathematics 2024-11-15 Saumyajit Das , Harsha Hutridurga

Stochasticity is a defining feature of the pairwise forces governing interactions in biological systems-from molecular motors to cell-cell adhesion-yet its consequences on large-scale dynamics remain poorly understood. Here, we show that…

Soft Condensed Matter · Physics 2025-08-27 Henry Alston , Raphael Voituriez , Thibault Bertrand

We develop a class of nonlocal delay Reaction-Diffusion (RD) models in a circular domain. Previous modeling efforts include RD population models with respect to one-dimensional unbounded domain, unbounded strip and rectangular spatial…

Analysis of PDEs · Mathematics 2014-12-16 M. Bani-Yaghoub , G. Yao , A. Reed

Nonlinear reaction-diffusion systems admit a wide variety of spatiotemporal patterns or structures. In this lecture, we point out that there is certain advantage in studying discrete arrays, namely cellular neural/nonlinear networks (CNNs),…

Pattern Formation and Solitons · Physics 2007-05-23 M. Lakshmanan , P. Muruganandam

In this paper, we propose a Spatial Robust Mixture Regression model to investigate the relationship between a response variable and a set of explanatory variables over the spatial domain, assuming that the relationships may exhibit complex…

Methodology · Statistics 2021-09-30 Wennan Chang , Pengtao Dang , Changlin Wan , Xiaoyu Lu , Yue Fang , Tong Zhao , Yong Zang , Bo Li , Chi Zhang , Sha Cao

The paper treats a reaction-diffusion equation with hysteretic nonlinearity on a one-dimensional lattice. It arises as a result of the spatial discretization of the corresponding continuous model with so-called nontransverse initial data…

Analysis of PDEs · Mathematics 2016-01-22 Pavel Gurevich , Sergey Tikhomirov

We study a reaction-diffusion system on the real line, where the reactions of the species are given by one reversible reaction according to the mass-action law. We describe different positive limits at both sides of infinity and investigate…

Analysis of PDEs · Mathematics 2023-04-07 Alexander Mielke , Stefanie Schindler

This paper is devoted to a nonlocal reaction-diffusion-advection model that describes the spatial dynamics of freshwater organisms in a river with a directional motion. Our goal is to investigate how the advection rate affects the dynamic…

Analysis of PDEs · Mathematics 2024-05-14 Yaobin Tang , Binxiang Dai

This paper explores the classification of parameter spaces for reaction-diffusion systems of two chemical species on stationary domains. The dynamics of the system are explored both in the absence and presence of diffusion. The parameter…

Pattern Formation and Solitons · Physics 2017-01-19 Wakil Sarfaraz , Anotida Madzvamuse

Q-conditional symmetries (nonclassical symmetries) for a general class of two-component reaction-diffusion systems with non-constant diffusivities are studied. The work is a natural continuation of our paper (Cherniha and Davydovych, 2012)…

Mathematical Physics · Physics 2019-09-17 Roman Cherniha , Vasyl' Davydovych
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