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Related papers: Exploring Large Protein Language Models in Constra…

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A plethora of protein language models have been released in recent years. Yet comparatively little work has addressed how to best sample from them to optimize desired biological properties. We fill this gap by proposing a flexible,…

Machine Learning · Computer Science 2026-05-08 Calvin McCarter , Nick Bhattacharya , Sebastian W. Ober , Hunter Elliott

Parameter Efficient Finetuning (PEFT) has emerged as a viable solution for improving the performance of Large Language Models (LLMs) without requiring massive resources and compute. Prior work on multilingual evaluation has shown that there…

Computation and Language · Computer Science 2024-07-23 Divyanshu Aggarwal , Ashutosh Sathe , Ishaan Watts , Sunayana Sitaram

Evaluation of Large Language Models (LLMs) is challenging because instruction-following necessitates alignment with human values and the required set of skills varies depending on the instruction. However, previous studies have mainly…

Computation and Language · Computer Science 2024-04-16 Seonghyeon Ye , Doyoung Kim , Sungdong Kim , Hyeonbin Hwang , Seungone Kim , Yongrae Jo , James Thorne , Juho Kim , Minjoon Seo

Fine-tuning large pre-trained language models for downstream tasks remains a critical challenge in natural language processing. This paper presents an empirical analysis comparing two efficient fine-tuning methods - BitFit and adapter…

Machine Learning · Computer Science 2024-01-09 Nigel Doering , Cyril Gorlla , Trevor Tuttle , Adhvaith Vijay

With the rapid development of natural language processing technology, large-scale language models (LLM) have achieved remarkable results in a variety of tasks. However, how to effectively train these huge models and improve their…

Artificial Intelligence · Computer Science 2024-12-09 Jiajing Chen , Bingying Liu , Xiaoxuan Liao , Jia Gao , Hongye Zheng , Yue Li

Large pretrained language models have transformed natural language processing, and their adaptation to protein sequences -- viewed as strings of amino acid characters -- has advanced protein analysis. However, the distinct properties of…

Other Quantitative Biology · Quantitative Biology 2025-10-14 Sheikh Azizul Hakim , Kowshic Roy , M Saifur Rahman

Accurately predicting protein melting temperature changes (Delta Tm) is fundamental for assessing protein stability and guiding protein engineering. Leveraging multi-modal protein representations has shown great promise in capturing the…

Machine Learning · Computer Science 2025-03-25 Daiheng Zhang , Yan Zeng , Xinyu Hong , Jinbo Xu

Protein language models (PLMs) have revolutionised computational biology through their ability to generate powerful sequence representations for diverse prediction tasks. However, their black-box nature limits biological interpretation and…

Biomolecules · Quantitative Biology 2025-04-11 Jan van Eck , Dea Gogishvili , Wilson Silva , Sanne Abeln

Recently, there has been a surge of interest in applying deep learning techniques to animal behavior recognition, particularly leveraging pre-trained visual language models, such as CLIP, due to their remarkable generalization capacity…

Computer Vision and Pattern Recognition · Computer Science 2025-05-02 Enmin Zhong , Carlos R. del-Blanco , Daniel Berjón , Fernando Jaureguizar , Narciso García

Although recent advances in scaling large language models (LLMs) have resulted in improvements on many NLP tasks, it remains unclear whether these models trained primarily with general web text are the right tool in highly specialized,…

Large language models (LLMs) have garnered considerable attention for their proficiency in tackling intricate tasks, particularly leveraging their capacities for zero-shot and in-context learning. However, their utility has been…

Biomolecules · Quantitative Biology 2024-05-14 Yiqing Shen , Outongyi Lv , Houying Zhu , Yu Guang Wang

This study aims to guide language model selection by investigating: 1) the necessity of finetuning versus zero-shot usage, 2) the benefits of domain-adjacent versus generic pretrained models, 3) the value of further domain-specific…

Computation and Language · Computer Science 2025-09-25 Lovedeep Gondara , Jonathan Simkin , Graham Sayle , Shebnum Devji , Gregory Arbour , Raymond Ng

The ability to follow instructions is crucial for Large Language Models (LLMs) to handle various real-world applications. Existing benchmarks primarily focus on evaluating pure response quality, rather than assessing whether the response…

Computation and Language · Computer Science 2024-06-06 Yuxin Jiang , Yufei Wang , Xingshan Zeng , Wanjun Zhong , Liangyou Li , Fei Mi , Lifeng Shang , Xin Jiang , Qun Liu , Wei Wang

Protein sequence design, determined by amino acid sequences, are essential to protein engineering problems in drug discovery. Prior approaches have resorted to evolutionary strategies or Monte-Carlo methods for protein design, but often…

The breakthrough performance of large language models (LLMs) comes with major computational footprints and high deployment costs. In this paper, we progress towards resolving this problem by proposing a novel structured compression approach…

Machine Learning · Computer Science 2023-10-27 Eldar Kurtic , Elias Frantar , Dan Alistarh

Pre-trained vision-language models (VLMs) have enabled significant progress in open vocabulary computer vision tasks such as image classification, object detection and image segmentation. Some recent works have focused on extending VLMs to…

Computer Vision and Pattern Recognition · Computer Science 2025-10-14 Rohit Gupta , Mamshad Nayeem Rizve , Jayakrishnan Unnikrishnan , Ashish Tawari , Son Tran , Mubarak Shah , Benjamin Yao , Trishul Chilimbi

Large Language Models are expressive tools that enable complex tasks of text understanding within Computational Social Science. Their versatility, while beneficial, poses a barrier for establishing standardized best practices within the…

Computers and Society · Computer Science 2024-08-05 Anders Giovanni Møller , Luca Maria Aiello

Large models such as Large Language Models (LLMs) and Vision Language Models (VLMs) have transformed artificial intelligence, powering applications in natural language processing, computer vision, and multimodal learning. However, fully…

Instruction tuning has optimized the specialized capabilities of large language models (LLMs), but it often requires extensive datasets and prolonged training times. The challenge lies in developing specific capabilities by identifying…

Computation and Language · Computer Science 2026-05-26 Run Zou , Jianhang Ding , Yifan Ding , Wen Wu , Hao Chen , Renshu Gu

With the rapid advancement of Multimodal Large Language Models (MLLMs), a variety of benchmarks have been introduced to evaluate their capabilities. While most evaluations have focused on complex tasks such as scientific comprehension and…

Computer Vision and Pattern Recognition · Computer Science 2024-12-24 Huan Liu , Lingyu Xiao , Jiangjiang Liu , Xiaofan Li , Ze Feng , Sen Yang , Jingdong Wang