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Systematic reviews, which entail the extraction of data from large numbers of scientific documents, are an ideal avenue for the application of machine learning. They are vital to many fields of science and philanthropy, but are very…

Computation and Language · Computer Science 2020-10-12 Seraphina Goldfarb-Tarrant , Alexander Robertson , Jasmina Lazic , Theodora Tsouloufi , Louise Donnison , Karen Smyth

Natural Language Processing (NLP) is an essential subset of artificial intelligence. It has become effective in several domains, such as healthcare, finance, and media, to identify perceptions, opinions, and misuse, among others. Privacy is…

Computation and Language · Computer Science 2025-01-20 Andrick Adhikari , Sanchari Das , Rinku Dewri

Objective: To automatically create large labeled training datasets and reduce the efforts of feature engineering for training accurate machine learning models for clinical information extraction. Materials and Methods: We propose a distant…

Information Retrieval · Computer Science 2018-04-24 Yanshan Wang , Sunghwan Sohn , Sijia Liu , Feichen Shen , Liwei Wang , Elizabeth J. Atkinson , Shreyasee Amin , Hongfang Liu

This paper presents a novel Natural Language Processing (NLP) framework for enhancing medical diagnosis through the integration of advanced techniques in data augmentation, feature extraction, and classification. The proposed approach…

Computation and Language · Computer Science 2025-02-12 Mohammad Ali Labbaf Khaniki , Sahabeh Saadati , Mohammad Manthouri

Natural Language Processing (NLP) is increasingly used as a key ingredient in critical decision-making systems such as resume parsers used in sorting a list of job candidates. NLP systems often ingest large corpora of human text, attempting…

Computation and Language · Computer Science 2020-07-14 Esma Wali , Yan Chen , Christopher Mahoney , Thomas Middleton , Marzieh Babaeianjelodar , Mariama Njie , Jeanna Neefe Matthews

Existing explanation methods for image classification struggle to provide faithful and plausible explanations. This paper addresses this issue by proposing a post-hoc natural language explanation method that can be applied to any CNN-based…

Artificial Intelligence · Computer Science 2025-03-19 Adam Wojciechowski , Mateusz Lango , Ondrej Dusek

In unforeseen situations, such as nuclear power plant's or civilian radiation accidents, there is a need for effective and computationally inexpensive methods to determine the expression level of a selected gene panel, allowing for rough…

Genomics · Quantitative Biology 2024-12-13 Tomasz Strzoda , Lourdes Cruz-Garcia , Mustafa Najim , Christophe Badie , Joanna Polanska

The medical adoption of NLP tools requires interpretability by end users, yet traditional explainable AI (XAI) methods are misaligned with clinical reasoning and lack clinician input. We introduce CHiRPE (Clinical High-Risk Prediction with…

Despite strong performance in medical question-answering, the clinical adoption of Large Language Models (LLMs) is critically hampered by their opaque 'black-box' reasoning, limiting clinician trust. This challenge is compounded by the…

Computer Vision and Pattern Recognition · Computer Science 2025-05-13 Chao Ding , Mouxiao Bian , Pengcheng Chen , Hongliang Zhang , Tianbin Li , Lihao Liu , Jiayuan Chen , Zhuoran Li , Yabei Zhong , Yongqi Liu , Haiqing Huang , Dongming Shan , Junjun He , Jie Xu

Large Language Models (LLMs) have demonstrated profound impact on Natural Language Processing (NLP) tasks. However, their effective deployment across diverse domains often require domain-specific adaptation strategies, as generic models may…

Artificial Intelligence · Computer Science 2025-10-15 Jingyi Wang , Hongyuan Zhu , Ye Niu , Yunhui Deng

There have been growing concerns around high-stake applications that rely on models trained with biased data, which consequently produce biased predictions, often harming the most vulnerable. In particular, biased medical data could cause…

Computation and Language · Computer Science 2024-09-12 Gavin Butts , Pegah Emdad , Jethro Lee , Shannon Song , Chiman Salavati , Willmar Sosa Diaz , Shiri Dori-Hacohen , Fabricio Murai

Recent advances in psychotherapy have focused on treatment personalization, such as by selecting treatment modules based on personalized networks. However, estimating personalized networks typically requires intensive longitudinal data,…

Artificial Intelligence · Computer Science 2025-12-08 Clarissa W. Ong , Hiba Arnaout , Kate Sheehan , Estella Fox , Eugen Owtscharow , Iryna Gurevych

The meaningful use of electronic health records (EHR) continues to progress in the digital era with clinical decision support systems augmented by artificial intelligence. A priority in improving provider experience is to overcome…

Computation and Language · Computer Science 2023-01-30 Yanjun Gao , Dmitriy Dligach , Timothy Miller , John Caskey , Brihat Sharma , Matthew M Churpek , Majid Afshar

Requirements Engineering (RE) is the initial step towards building a software system. The success or failure of a software project is firmly tied to this phase, based on communication among stakeholders using natural language. The problem…

Software Engineering · Computer Science 2021-12-07 Mohammad Kasra Habib , Stefan Wagner , Daniel Graziotin

Developing explainability methods for Natural Language Processing (NLP) models is a challenging task, for two main reasons. First, the high dimensionality of the data (large number of tokens) results in low coverage and in turn small…

Computation and Language · Computer Science 2023-03-08 Peyman Jalali , Nengfeng Zhou , Yufei Yu

This study applies Large Language Models (LLMs) to two foundational Electronic Health Record (EHR) data science tasks: structured data querying (using programmatic languages, Python/Pandas) and information extraction from unstructured…

Computation and Language · Computer Science 2026-01-29 Juan Jose Rubio Jan , Jack Wu , Julia Ive

Medical problem-solving demands expert knowledge and intricate reasoning. Recent studies of large language models (LLMs) attempt to ease this complexity by introducing external knowledge verification through retrieval-augmented generation…

Computation and Language · Computer Science 2026-01-19 Yue Huang , Yanyuan Chen , Dexuan Xu , Chenzhuo Zhao , Weihua Yue , Yu Huang

Driven by the visions of Data Science, recent years have seen a paradigm shift in Natural Language Processing (NLP). NLP has set the milestone in text processing and proved to be the preferred choice for researchers in the healthcare…

Computers and Society · Computer Science 2020-07-20 Ganga Prasad Basyal , Bhaskar P. Rimal , David Zeng

Large language models (LLMs) have achieved great success across diverse tasks, and fine-tuning is sometimes needed to further enhance generation quality. Most existing methods rely on human supervision or parameter retraining, both of which…

Computation and Language · Computer Science 2025-05-27 Zhen-Yu Zhang , Jiandong Zhang , Huaxiu Yao , Gang Niu , Masashi Sugiyama

Dementia is under-recognized in the community, under-diagnosed by healthcare professionals, and under-coded in claims data. Information on cognitive dysfunction, however, is often found in unstructured clinician notes within medical records…

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