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Novel contexts may often arise in complex querying scenarios such as in evidence-based medicine (EBM) involving biomedical literature, that may not explicitly refer to entities or canonical concept forms occurring in any fact- or rule-based…

Computation and Language · Computer Science 2019-11-12 Manirupa Das , Juanxi Li , Eric Fosler-Lussier , Simon Lin , Soheil Moosavinasab , Steve Rust , Yungui Huang , Rajiv Ramnath

With the thriving of pre-trained language model (PLM) widely verified in various of NLP tasks, pioneer efforts attempt to explore the possible cooperation of the general textual information in PLM with the personalized behavioral…

Information Retrieval · Computer Science 2023-11-28 Zekai Qu , Ruobing Xie , Chaojun Xiao , Yuan Yao , Zhiyuan Liu , Fengzong Lian , Zhanhui Kang , Jie Zhou

Objective: We investigate whether deep learning techniques for natural language processing (NLP) can be used efficiently for patient phenotyping. Patient phenotyping is a classification task for determining whether a patient has a medical…

Clinical decision-making requires reasoning over incomplete, imprecise, and linguistically expressed patient narratives. While large language models (LLMs) excel at extracting latent information from natural language, they lack the…

Artificial Intelligence · Computer Science 2026-05-26 Xiaoyang Fan , Yufan Cai , Zhe Hou , Jin Song Dong

The fast development of Large Language Models (LLMs) offers growing opportunities to further improve sequential recommendation systems. Yet for some practitioners, integrating LLMs to their existing base recommendation systems raises…

Information Retrieval · Computer Science 2025-04-17 Nanshan Jia , Chenfei Yuan , Yuhang Wu , Zeyu Zheng

Matching patients to clinical trials demands a systematic and reasoned interpretation of documents which require significant expert-level background knowledge, over a complex set of well-defined eligibility criteria. Moreover, this…

Computation and Language · Computer Science 2024-10-01 Mael Jullien , Alex Bogatu , Harriet Unsworth , Andre Freitas

The introduction of large language models and other influential developments in AI-based language processing have led to an evolution in the methods available to quantitatively analyse language data. With the resultant growth of attention…

Research projects, including those focused on cancer, rely on the manual extraction of information from clinical reports. This process is time-consuming and prone to errors, limiting the efficiency of data-driven approaches in healthcare.…

Computation and Language · Computer Science 2025-05-16 J. Moreno-Casanova , J. M. Auñón , A. Mártinez-Pérez , M. E. Pérez-Martínez , M. E. Gas-López

Online medical consultations generate large volumes of conversational health data that often embed protected health information, requiring robust methods to classify data categories and assign risk levels in line with policies and practice.…

Computation and Language · Computer Science 2026-01-16 Yiwei Yan , Hao Li , Hua He , Gong Kai , Zhengyi Yang , Guanfeng Liu

This study proposes a framework for the automated hyperparameter optimization of a bearing fault detection pipeline for permanent magnet synchronous motors (PMSMs) without the need of external sensors. A automated machine learning (AutoML)…

Signal Processing · Electrical Eng. & Systems 2023-06-21 Tobias Wagner , Alexander Gepperth , Elmar Engels

Physicians considering clinical trials for their patients are met with the laborious process of checking many text based eligibility criteria. Large Language Models (LLMs) have shown to perform well for clinical information extraction and…

Machine Learning · Computer Science 2023-06-30 Danny M. den Hamer , Perry Schoor , Tobias B. Polak , Daniel Kapitan

Large Language Models (LLMs) have made query reformulation ubiquitous in modern retrieval and Retrieval-Augmented Generation (RAG) pipelines, enabling the generation of multiple semantically equivalent query variants. However, executing the…

Information Retrieval · Computer Science 2026-04-27 Negar Arabzadeh , Andrew Drozdov , Michael Bendersky , Matei Zaharia

The proliferation of Large Language Models (LLMs) in medicine has enabled impressive capabilities, yet a critical gap remains in their ability to perform systematic, transparent, and verifiable reasoning, a cornerstone of clinical practice.…

Computation and Language · Computer Science 2025-08-04 Wenxuan Wang , Zizhan Ma , Meidan Ding , Shiyi Zheng , Shengyuan Liu , Jie Liu , Jiaming Ji , Wenting Chen , Xiang Li , Linlin Shen , Yixuan Yuan

With the increasing availability of patient data, modern medicine is shifting towards prospective healthcare. Electronic health records offer a variety of information useful for clinical patient characterization and the development of…

Machine Learning · Computer Science 2025-05-27 Fabio Azzalini , Tommaso Dolci , Marco Vagaggini

This technical report introduces a Named Clinical Entity Recognition Benchmark for evaluating language models in healthcare, addressing the crucial natural language processing (NLP) task of extracting structured information from clinical…

Syllable detection is an important speech analysis task with applications in speech rate estimation, word segmentation, and automatic prosody detection. Based on the well understood acoustic correlates of speech articulation, it has been…

Audio and Speech Processing · Electrical Eng. & Systems 2021-03-09 Kamini Sabu , Syomantak Chaudhuri , Preeti Rao , Mahesh Patil

Doctors and patients alike increasingly use Large Language Models (LLMs) to diagnose clinical cases. However, unlike domains such as math or coding, where correctness can be objectively defined by the final answer, medical diagnosis…

Computation and Language · Computer Science 2025-05-21 Kevin Wu , Eric Wu , Rahul Thapa , Kevin Wei , Angela Zhang , Arvind Suresh , Jacqueline J. Tao , Min Woo Sun , Alejandro Lozano , James Zou

We introduce EPAG, a benchmark dataset and framework designed for Evaluating the Pre-consultation Ability of LLMs using diagnostic Guidelines. LLMs are evaluated directly through HPI-diagnostic guideline comparison and indirectly through…

Computation and Language · Computer Science 2026-05-13 Jean Seo , Gibaeg Kim , Kihun Shin , Seungseop Lim , Hyunkyung Lee , Wooseok Han , Jongwon Lee , Eunho Yang

Traceability, the ability to trace relevant software artifacts to support reasoning about the quality of the software and its development process, plays a crucial role in requirements and software engineering, particularly for…

Software Engineering · Computer Science 2024-05-20 Jin L. C. Guo , Jan-Philipp Steghöfer , Andreas Vogelsang , Jane Cleland-Huang

Objective: Fluoropyrimidines are widely prescribed for colorectal and breast cancers, but are associated with toxicities such as hand-foot syndrome and cardiotoxicity. Since toxicity documentation is often embedded in clinical notes, we…

Computation and Language · Computer Science 2025-10-24 Xizhi Wu , Madeline S. Kreider , Philip E. Empey , Chenyu Li , Yanshan Wang
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