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Large language models (LLMs) offer significant potential to accelerate systematic literature reviews (SLRs), yet current approaches often rely on brittle, manually crafted prompts that compromise reliability and reproducibility. This…

Computation and Language · Computer Science 2025-09-03 Teo Susnjak

Information extraction from narrative clinical notes is useful for patient care, as well as for secondary use of medical data, for research or clinical purposes. Many studies focused on information extraction from English clinical texts,…

Computation and Language · Computer Science 2021-04-05 Emma Chiaramello , Francesco Pinciroli , Alberico Bonalumi , Angelo Caroli , Gabriella Tognola

Generative Large Language Models (LLMs) hold significant promise in healthcare, demonstrating capabilities such as passing medical licensing exams and providing clinical knowledge. However, their current use as information retrieval tools…

Clinical notes are an essential component of a health record. This paper evaluates how natural language processing (NLP) can be used to identify the risk of acute care use (ACU) in oncology patients, once chemotherapy starts. Risk…

Computation and Language · Computer Science 2023-06-28 Claudio Fanconi , Marieke van Buchem , Tina Hernandez-Boussard

Understanding the meaning of text often involves reasoning about entities and their relationships. This requires identifying textual mentions of entities, linking them to a canonical concept, and discerning their relationships. These tasks…

Computation and Language · Computer Science 2019-12-04 Trapit Bansal , Pat Verga , Neha Choudhary , Andrew McCallum

Natural Language Processing (NLP) has transformed various fields beyond linguistics by applying techniques originally developed for human language to the analysis of biological sequences. This review explores the application of NLP methods…

Computation and Language · Computer Science 2025-06-04 Ella Rannon , David Burstein

Safety- and security-critical systems have to be thoroughly tested against their specifications. The state of practice is to have _natural language_ specifications, from which test cases are derived manually - a process that is slow,…

Software Engineering · Computer Science 2025-11-25 Kuangxiangzi Liu , Dhiman Chakraborty , Alexander Liggesmeyer , Andreas Zeller

Purpose: This study evaluates the effectiveness and impact of automated order-based protocol assignment for magnetic resonance imaging (MRI) exams using natural language processing (NLP) and deep learning (DL). Methods: NLP tools were…

Machine Learning · Computer Science 2021-06-17 Andrew S. Nencka , Mohammad Sherafati , Timothy Goebel , Parag Tolat , Kevin M. Koch

Based on official estimates, 50 million people worldwide are affected by dementia, and this number increases by 10 million new patients every year. Without a cure, clinical prognostication and early intervention represent the most effective…

Computation and Language · Computer Science 2024-09-06 Francisco de Arriba-Pérez , Silvia García-Méndez

Medical report interpretation plays a crucial role in healthcare, enabling both patient-facing explanations and effective information flow across clinical systems. While recent vision-language models (VLMs) and large language models (LLMs)…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Fangxin Shang , Yuan Xia , Dalu Yang , Yahui Wang , Binglin Yang

The volume and diversity of digital information have led to a growing reliance on Machine Learning techniques, such as Natural Language Processing, for interpreting and accessing appropriate data. While vector and graph embeddings represent…

Computation and Language · Computer Science 2025-07-08 Oliver Robert Fox , Giacomo Bergami , Graham Morgan

In modern electronic medical records (EMR) much of the clinically important data - signs and symptoms, symptom severity, disease status, etc. - are not provided in structured data fields, but rather are encoded in clinician generated…

Computation and Language · Computer Science 2014-08-10 Son Doan , Mike Conway , Tu Minh Phuong , Lucila Ohno-Machado

Although there are a couple of open-source language processing pipelines available for Hungarian, none of them satisfies the requirements of today's NLP applications. A language processing pipeline should consist of close to…

Computation and Language · Computer Science 2022-01-12 György Orosz , Zsolt Szántó , Péter Berkecz , Gergő Szabó , Richárd Farkas

In recent years, the interest in Big Data sources has been steadily growing within the Official Statistic community. The Italian National Institute of Statistics (Istat) is currently carrying out several Big Data pilot studies. One of these…

Machine Learning · Computer Science 2021-06-17 Fabrizio De Fausti , Francesco Pugliese , Diego Zardetto

Clinical practice guidelines are long, multimodal documents whose branching recommendations are difficult to convert into executable clinical decision support (CDS), and one-shot parsing often breaks cross-page continuity. Recent LLM/VLM…

Computer Vision and Pattern Recognition · Computer Science 2026-04-06 Onur Selim Kilic , Yeti Z. Gurbuz , Cem O. Yaldiz , Afra Nawar , Etrit Haxholli , Ogul Can , Eli Waxman

Extracting phenotypes from clinical text has been shown to be useful for a variety of clinical use cases such as identifying patients with rare diseases. However, reasoning with numerical values remains challenging for phenotyping in…

Computation and Language · Computer Science 2022-04-22 Ashwani Tanwar , Jingqing Zhang , Julia Ive , Vibhor Gupta , Yike Guo

With generative artificial intelligence (AI), particularly large language models (LLMs), continuing to make inroads in healthcare, it is critical to supplement traditional automated evaluations with human evaluations. Understanding and…

Accurate symptom-to-disease classification and clinically grounded treatment recommendations remain challenging, particularly in heterogeneous patient settings with high diagnostic risk. Existing large language model (LLM)-based systems…

We present an automated pipeline for estimating Verb Frame Frequencies (VFFs), the frequency with which a verb appears in particular syntactic frames. VFFs provide a powerful window into syntax in both human and machine language systems,…

Computation and Language · Computer Science 2025-07-31 Adam M. Morgan , Adeen Flinker

Objective: Electronic health records (EHR) are widely available to complement administrative data-based disease surveillance and healthcare performance evaluation. Defining conditions from EHR is labour-intensive and requires extensive…

Computation and Language · Computer Science 2025-04-09 Jie Pan , Seungwon Lee , Cheligeer Cheligeer , Elliot A. Martin , Kiarash Riazi , Hude Quan , Na Li