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In clinical artificial intelligence (AI), graph representation learning, mainly through graph neural networks (GNNs), stands out for its capability to capture intricate relationships within structured clinical datasets. With diverse data --…

Machine Learning · Computer Science 2023-12-13 Ruth Johnson , Michelle M. Li , Ayush Noori , Owen Queen , Marinka Zitnik

X-ray medical report generation is one of the important applications of artificial intelligence in healthcare. With the support of large foundation models, the quality of medical report generation has significantly improved. However,…

Computer Vision and Pattern Recognition · Computer Science 2025-08-06 Futian Wang , Yuhan Qiao , Xiao Wang , Fuling Wang , Yuxiang Zhang , Dengdi Sun

One of the significant barriers to the training of statistical models on knowledge graphs is the difficulty that scientists have in finding the best input data to address their prediction goal. In addition to this, a key challenge is to…

Artificial Intelligence · Computer Science 2023-11-22 Mattia Fumagalli , Marco Boffo , Daqian Shi , Mayukh Bagchi , Fausto Giunchiglia

Medical deep learning models depend heavily on domain-specific knowledge to perform well on knowledge-intensive clinical tasks. Prior work has primarily leveraged unimodal knowledge graphs, such as the Unified Medical Language System…

Artificial Intelligence · Computer Science 2025-05-26 Xiaochen Wang , Yuan Zhong , Lingwei Zhang , Lisong Dai , Ting Wang , Fenglong Ma

The effectiveness of artificial intelligence (AI) in healthcare is significantly hindered by unstructured clinical documentation, which results in noisy, inconsistent, and logically fragmented training data. To address this challenge, we…

Machine Learning · Computer Science 2025-10-21 Dun Liu , Qin Pang , Guangai Liu , Hongyu Mou , Jipeng Fan , Yiming Miao , Pin-Han Ho , Limei Peng

Biomedical knowledge graphs (BKGs) have emerged as powerful tools for organizing and leveraging the vast and complex data found across the biomedical field. Yet, current reviews of BKGs often limit their scope to specific domains or…

Computation and Language · Computer Science 2025-01-23 Yuxing Lu , Sin Yee Goi , Xukai Zhao , Jinzhuo Wang

As multimodal LLM-driven agents advance in autonomy and generalization, traditional static datasets face inherent scalability limitations and are insufficient for fully assessing their capabilities in increasingly complex and diverse tasks.…

Computation and Language · Computer Science 2026-03-06 Yurun Chen , Xavier Hu , Yuhan Liu , Ziqi Wang , Zeyi Liao , Lin Chen , Feng Wei , Yuxi Qian , Bo Zheng , Keting Yin , Shengyu Zhang

Knowledge graph is a popular format for representing knowledge, with many applications to semantic search engines, question-answering systems, and recommender systems. Real-world knowledge graphs are usually incomplete, so knowledge graph…

Machine Learning · Computer Science 2023-04-26 Hung Nghiep Tran , Atsuhiro Takasu

Recent advances in learning multi-modal representation have witnessed the success in biomedical domains. While established techniques enable handling multi-modal information, the challenges are posed when extended to various clinical…

Computer Vision and Pattern Recognition · Computer Science 2024-07-09 Chenxin Li , Xinyu Liu , Cheng Wang , Yifan Liu , Weihao Yu , Jing Shao , Yixuan Yuan

Multi-relational temporal graphs are powerful tools for modeling real-world data, capturing the evolving and interconnected nature of entities over time. Recently, many novel models are proposed for ML on such graphs intensifying the need…

Background. In the last decades, several life science resources have structured data using the same framework and made these accessible using the same query language to facilitate interoperability. Knowledge graphs have seen increased…

Knowledge Graph Embeddings (KGE) have become a quite popular class of models specifically devised to deal with ontologies and graph structure data, as they can implicitly encode statistical dependencies between entities and relations in a…

Artificial Intelligence · Computer Science 2023-03-27 Michelangelo Diligenti , Francesco Giannini , Stefano Fioravanti , Caterina Graziani , Moreno Falaschi , Giuseppe Marra

Papers, patents, and clinical trials are essential scientific resources in biomedicine, crucial for knowledge sharing and dissemination. However, these documents are often stored in disparate databases with varying management standards and…

Digital Libraries · Computer Science 2025-06-19 Jian Xu , Chao Yu , Jiawei Xu , Vetle I. Torvik , Jaewoo Kang , Mujeen Sung , Min Song , Yi Bu , Ying Ding

Industry 5.0 demands IoT systems that support seamless human-machine collaboration, yet current IoT data analysis requires deep domain, deployment, and query expertise. We show that combining Large Language Models (LLMs) with Knowledge…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-15 Junaid Ahmed Khan , Hiari Pizzini Cavagna , Andrea Proia , Andrea Bartolini

Scaling vision-language models into Visual Multiagent Systems (VMAS) is hindered by two coupled issues. First, communication topologies are fixed before inference, leaving them blind to visual content and query context; second, agent…

Artificial Intelligence · Computer Science 2026-04-21 Zheng Nie , Ruolin Shen , Xinlei Yu , Bo Yin , Jiangning Zhang , Xiaobin Hu

The integration of knowledge graphs and graph machine learning (GML) in genomic data analysis offers several opportunities for understanding complex genetic relationships, especially at the RNA level. We present a comprehensive approach for…

Artificial Intelligence · Computer Science 2024-08-06 Shivika Prasanna , Ajay Kumar , Deepthi Rao , Eduardo Simoes , Praveen Rao

Knowledge graph (KG) embedding aims at learning the latent representations for entities and relations of a KG in continuous vector spaces. An empirical observation is that the head (tail) entities connected by the same relation often share…

Computation and Language · Computer Science 2022-06-17 Xueliang Wang , Jiajun Chen , Feng Wu , Jie Wang

Background: Recent years are seeing a growing impetus in the semantification of scholarly knowledge at the fine-grained level of scientific entities in knowledge graphs. The Open Research Knowledge Graph (ORKG) https://www.orkg.org/…

Visualization recommendation or automatic visualization generation can significantly lower the barriers for general users to rapidly create effective data visualizations, especially for those users without a background in data…

Human-Computer Interaction · Computer Science 2021-12-28 Haotian Li , Yong Wang , Songheng Zhang , Yangqiu Song , Huamin Qu

Advanced AI technologies are increasingly integrated into clinical domains to advance patient care. The design and development of clinical AI technologies necessitate seamless collaboration between clinical and technical experts. However,…

Human-Computer Interaction · Computer Science 2026-05-05 Bingsheng Yao , Yao Du , Yue Fu , Xuhai Xu , Yanjun Gao , Hong Yu , Dakuo Wang