Related papers: Sequence Reconstruction for the Single-Deletion Si…
We consider the discrete memoryless symmetric primitive relay channel, where, a source $X$ wants to send information to a destination $Y$ with the help of a relay $Z$ and the relay can communicate to the destination via an error-free…
We examine an error-correcting coding framework in which each coded symbol is constrained to be a function of a fixed subset of the message symbols. With an eye toward distributed storage applications, we seek to design systematic codes…
In coding theory, handling errors that occur when symbols are inserted or deleted from a transmitted message is a long-standing challenge. Optimising redundancy for insertion and deletion channels remains a key open problem with significant…
The set of all $ q $-ary strings that do not contain repeated substrings of length $ \leqslant\! 3 $ (i.e., that do not contain substrings of the form $ a a $, $ a b a b $, and $ a b c a b c $) constitutes a code correcting an arbitrary…
Nanopore sequencing, superior to other sequencing technologies for DNA storage in multiple aspects, has recently attracted considerable attention. Its high error rates, however, demand thorough research on practical and efficient coding…
With the emergence of new storage and communication methods, the insertion, deletion, and substitution (IDS) channel has attracted considerable attention. However, many topics on the IDS channel and the associated Levenshtein distance…
We study perfect error-correcting codes in $\mathbb{Z}^n$ for the symmetric limited-magnitude error channel, where at most $e$ coordinates of an integer vector may be altered by a value whose magnitude is at most $s$. Geometrically, such…
Due to its high data density and longevity, DNA is considered a promising medium for satisfying ever-increasing data storage needs. However, the diversity of errors that occur in DNA sequences makes efficient error-correction a challenging…
In this paper, we consider a broadcasting process in which information is propagated from a given root node on a noisy tree network, and answer the question that whether the symbols at the nth level of the tree contain non-vanishing…
Coherent network error correction is the error-control problem in network coding with the knowledge of the network codes at the source and sink nodes. With respect to a given set of local encoding kernels defining a linear network code, we…
In the (deletion-channel) trace reconstruction problem, there is an unknown $n$-bit source string $x$. An algorithm is given access to independent traces of $x$, where a trace is formed by deleting each bit of~$x$ independently with…
The goal of trace reconstruction is to reconstruct an unknown $n$-bit string $x$ given only independent random traces of $x$, where a random trace of $x$ is obtained by passing $x$ through a deletion channel. A Statistical Query (SQ)…
We introduce the following natural generalization of trace reconstruction, parameterized by a deletion probability $\delta \in (0,1)$ and length $n$: There is a length $n$ string of probabilities, $S=p_1,\ldots,p_n,$ and each "trace" is…
Regenerating codes are a class of recently developed codes for distributed storage that, like Reed-Solomon codes, permit data recovery from any arbitrary k of n nodes. However regenerating codes possess in addition, the ability to repair a…
Recently, a secrecy measure based on list-reconstruction has been proposed [2], in which a wiretapper is allowed to produce a list of $2^{mR_{L}}$ reconstruction sequences and the secrecy is measured by the minimum distortion over the…
In the trace reconstruction problem, an unknown bit string ${\bf x}\in\{0,1 \}^n$ is sent through a deletion channel where each bit is deleted independently with some probability $q\in(0,1)$, yielding a contracted string $\widetilde{\bf…
Consider two or more strings $\mathbf{x}^1,\mathbf{x}^2,\ldots,$ that are concatenated to form $\mathbf{x}=\langle \mathbf{x}^1,\mathbf{x}^2,\ldots \rangle$. Suppose that up to $\delta$ deletions occur in each of the concatenated strings.…
In this paper, we investigate the reconstruction of permutations on {1, 2, ..., n} from betweenness constraints involving the minimum and the maximum element located between t and t+1, for all t=1, 2, ..., n-1. We propose two variants of…
The channel output entropy of a transmitted sequence is the entropy of the possible channel outputs and similarly the channel input entropy of a received sequence is the entropy of all possible transmitted sequences. The goal of this work…
Given a sequence $s_1$ of $n$ letters drawn i.i.d. from an alphabet of size $\sigma$ and a mutated substring $s_2$ of length $m < n$, we often want to recover the mutation history that generated $s_2$ from $s_1$. Modern sequence aligners…