Related papers: DNA codes from $(\text{\textbaro}, \mathfrak{d}, \…
We construct $\mathbb{Z}_p$-lattices and $\mathbb{F}_q[\![t]\!]$-lattices from cyclic $(f,\sigma)$-codes over finite chain rings, employing quotients of natural nonassociative orders and principal left ideals in carefully chosen…
In this paper we introduce the notion of $\lambda$-constacyclic codes over finite rings $R$ for arbitary element $\lambda$ of $R$. We study the non-invertible-element constacyclic codes (NIE-constacyclic codes) over finite principal ideal…
In this paper, we study the structure of cyclic, quasi-cyclic, constacyclic codes and their skew codes over the finite ring R=Z_3+vZ_3+v^2Z_3, v^3=v. The Gray images of cyclic, quasi-cyclic, skew cyclic, skew quasi-cyclic and skew…
Multi-dimensional cyclic code is a natural generalization of cyclic code. In an earlier paper we explored two-dimensional constacyclic codes over finite fields. Following the same technique, here we characterize the algebraic structure of…
We study algorithms for solving the problem of constructing a text (long string) from a dictionary (sequence of small strings). The problem has an application in bioinformatics and has a connection with the Sequence assembly method for…
The aim of this paper is to determine the algebraic structure of multidimensional cyclic codes over a finite chain ring $\mathfrak{R}$. An algorithm to find the generator polynomials of $n$ dimensional ($n$D) cyclic codes of length…
Data storage in DNA is developing as a possible solution for archival digital data. Recently, to further increase the potential capacity of DNA-based data storage systems, the combinatorial composite DNA synthesis method was suggested. This…
Designing short DNA words is a problem of constructing a set (i.e., code) of n DNA strings (i.e., words) with the minimum length such that the Hamming distance between each pair of words is at least k and the n words satisfy a set of…
The classical way of extending an $[n, k, d]$ linear code $\C$ is to add an overall parity-check coordinate to each codeword of the linear code $\C$. This extended code, denoted by $\overline{\C}(-\bone)$ and called the standardly extended…
In this paper we study error-correcting codes for the storage of data in synthetic deoxyribonucleic acid (DNA). We investigate a storage model where a data set is represented by an unordered set of $M$ sequences, each of length $L$. Errors…
This paper is focused in designing an efficient on-line algorithm to reconstruct a DNA sequence and search the genes in it, we assume that the segment have no mutation or reading error, the algorithm is based on de Bruijn Graph for…
Research on codes over finite rings has intensified since the discovery in 1994 of the fact that some best binary non-linear codes can be obtained as images of $\mathbb{Z}_4$-linear codes. Codes over many different finite rings has been a…
In this paper, we study some repeated-root two-dimensional cyclic and constacyclic codes over a finite field $F=\mathbb{F}_q$. We obtain the generator matrices and generator polynomials of these codes and their duals. We also investigate…
DNA sequencing is the process of determining the exact order of the nucleotide bases of an individual's genome in order to catalogue sequence variation and understand its biological implications. Whole-genome sequencing techniques produce…
Constacyclic codes over finite fields are a family of linear codes and contain cyclic codes as a subclass. Constacyclic codes are related to many areas of mathematics and outperform cyclic codes in several aspects. Hence, constacyclic codes…
By using the notion of $d$-embedding $\Gamma$ of a (canonical) subgeometry $\Sigma$ and of exterior set with respect to the $h$-secant variety $\Omega_{h}(\mathcal{A})$ of a subset $\mathcal{A}$, $ 0 \leq h \leq n-1$, in the finite…
A general method for constructing convolutional codes from units in Laurent series over matrix rings is presented. Using group ring as matrix rings, this forms a basis for in-depth exploration of convolutional codes from group ring…
Motivated by applications in in-vivo DNA storage, we study codes for correcting duplications. A reverse-complement duplication of length $k$ is the insertion of the reversed and complemented copy of a substring of length $k$ adjacent to its…
Skew polynomial rings over finite fields ([7] and [10]) and over Galois rings ([8]) have been used to study codes. In this paper, we extend this concept to finite chain rings. Properties of skew constacyclic codes generated by monic right…
Within biology, it is of interest to construct DNA complexes of a certain shape. These complexes can be represented through graph theory, using edges to model strands of DNA joined at junctions, represented by vertices. Because guided…