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A partially embedded graph (or PEG) is a triple (G,H,\H), where G is a graph, H is a subgraph of G, and \H is a planar embedding of H. We say that a PEG (G,H,\H) is planar if the graph G has a planar embedding that extends the embedding \H.…
We introduce new sufficient conditions for intrinsic knotting and linking. A graph on n vertices with at least 4n-9 edges is intrinsically linked. A graph on n vertices with at least 5n-14 edges is intrinsically knotted. We also classify…
Knots are commonly represented and manipulated via diagrams, which are decorated planar graphs. When such a knot diagram has low treewidth, parameterized graph algorithms can be leveraged to ensure the fast computation of many invariants…
We describe an algorithm that recognizes some (perhaps all) intrinsically knotted (IK) graphs, and can help find knotless embeddings for graphs that are not IK. The algorithm, implemented as a Mathematica program, has already been used by…
While the problem of determining whether an embedding of a graph $G$ in $\mathbb{R}^2$ is {\it infinitesimally rigid} is well understood, specifying whether a given embedding of $G$ is {\it rigid} or not is still a hard task that usually…
We prove that for every closed, connected, orientable, irreducible 3-manifold, there exists an alternating group A_n which is not the topological symmetry group of any graph embedded in the manifold. We also show that for every finite group…
In this paper we introduce a representation of a embedded knotted (sometimes Lagrangian) tori in $\BR^4$ called a hypercube diagram, i.e., a 4-dimensional cube diagram. We prove the existence of hypercube homology that is invariant under…
Methods that learn representations of nodes in a graph play a critical role in network analysis since they enable many downstream learning tasks. We propose Graph2Gauss - an approach that can efficiently learn versatile node embeddings on…
It is shown that for any locally knotted edge of a 3-connected graph in $S^3$, there is a ball that contains all of the local knots of that edge and is unique up to an isotopy setwise fixing the graph. This result is applied to the study of…
A graph $G$ is a link-irregular graph if every two distinct vertices of $G$ have non-isomorphic links. The link of a vertex $v$ in $G$ is the subgraph induced by the neighbors of $v$ in $G$. Ali, Chartrand and Zhang [Discussiones…
For a graph $G$, let $t(G)$ denote the maximum number of vertices in an induced subgraph of $G$ that is a tree. Further, for a vertex $v\in V(G)$, let $t^v(G)$ denote the maximum number of vertices in an induced subgraph of $G$ that is a…
Whitney proved that 3-connected planar graphs admit a unique embedding on the sphere. In contrast, Enami investigated embeddings of 3-connected cubic planar graphs on non-spherical surfaces with non-negative Euler characteristic. He…
In this note we study embeddings of Cayley graphs of right groups on surfaces. We characterize those right groups which have a toroidal but no planar Cayley graph, such that the generating system of the right group has a minimal generating…
Chord diagrams on circles and their intersection graphs (also known as circle graphs) have been intensively studied, and have many applications to the study of knots and knot invariants, among others. However, chord diagrams on more general…
We consider embeddings of 3-regular graphs into 3-dimensional Cartesian coordinates, in such a way that two vertices are adjacent if and only if two of their three coordinates are equal (that is, if they lie on an axis-parallel line) and…
A complete structural characterization of graphs with no $K_{3,4}$ minor is obtained, and the following consequences are established. Every $4$-connected non-planar graph with at least seven vertices and minimum degree at least five…
For each $n\ge 14$, we provide an example of a linklessly embeddable, Tutte-4-connected graph of order $n$.
A drawing of a graph $G$ is radial if the vertices of $G$ are placed on concentric circles $C_1, \ldots, C_k$ with common center $c$, and edges are drawn radially: every edge intersects every circle centered at $c$ at most once. $G$ is…
Odd coloring is a proper coloring with an additional restriction that every non-isolated vertex has some color that appears an odd number of times in its neighborhood. The minimum number of colors $k$ that can ensure an odd coloring of a…
A mapping $\alpha : V(G) \to V(H)$ from the vertex set of one graph $G$ to another graph $H$ is an isometric embedding if the shortest path distance between any two vertices in $G$ equals the distance between their images in $H$. Here, we…