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Bidirectional Encoder Representations from Transformers (BERT) represents the latest incarnation of pretrained language models which have recently advanced a wide range of natural language processing tasks. In this paper, we showcase how…

Computation and Language · Computer Science 2019-09-06 Yang Liu , Mirella Lapata

In natural language processing (NLP), the focus has shifted from encoder-only tiny language models like BERT to decoder-only large language models(LLMs) such as GPT-3. However, LLMs' practical application in the financial sector has…

Information Retrieval · Computer Science 2025-07-08 Xuan Xu , Fufang Wen , Beilin Chu , Zhibing Fu , Qinhong Lin , Jiaqi Liu , Binjie Fei , Yu Li , Linna Zhou , Zhongliang Yang

Large, pre-trained transformer-based language models such as BERT have drastically changed the Natural Language Processing (NLP) field. We present a survey of recent work that uses these large language models to solve NLP tasks via…

Computation and Language · Computer Science 2021-11-03 Bonan Min , Hayley Ross , Elior Sulem , Amir Pouran Ben Veyseh , Thien Huu Nguyen , Oscar Sainz , Eneko Agirre , Ilana Heinz , Dan Roth

Masked language modeling (MLM) pre-training methods such as BERT corrupt the input by replacing some tokens with [MASK] and then train a model to reconstruct the original tokens. While they produce good results when transferred to…

Computation and Language · Computer Science 2020-03-25 Kevin Clark , Minh-Thang Luong , Quoc V. Le , Christopher D. Manning

Even though sequence-to-sequence neural machine translation (NMT) model have achieved state-of-art performance in the recent fewer years, but it is widely concerned that the recurrent neural network (RNN) units are very hard to capture the…

Computation and Language · Computer Science 2018-05-28 Wen Zhang , Jiawei Hu , Yang Feng , Qun Liu

Transformer neural networks, particularly Bidirectional Encoder Representations from Transformers (BERT), have shown remarkable performance across various tasks such as classification, text summarization, and question answering. However,…

Machine Learning · Computer Science 2025-02-18 Matteo Bonino , Giorgia Ghione , Giansalvo Cirrincione

We present CodeBERT, a bimodal pre-trained model for programming language (PL) and nat-ural language (NL). CodeBERT learns general-purpose representations that support downstream NL-PL applications such as natural language codesearch, code…

Computation and Language · Computer Science 2020-09-21 Zhangyin Feng , Daya Guo , Duyu Tang , Nan Duan , Xiaocheng Feng , Ming Gong , Linjun Shou , Bing Qin , Ting Liu , Daxin Jiang , Ming Zhou

We create a reusable Transformer, BrainBERT, for intracranial recordings bringing modern representation learning approaches to neuroscience. Much like in NLP and speech recognition, this Transformer enables classifying complex concepts,…

Machine Learning · Computer Science 2023-03-01 Christopher Wang , Vighnesh Subramaniam , Adam Uri Yaari , Gabriel Kreiman , Boris Katz , Ignacio Cases , Andrei Barbu

Functional annotation of microbial genomes is often biased toward protein-coding genes, leaving a vast, unexplored landscape of non-coding RNAs (ncRNAs) that are critical for regulating bacterial and archaeal physiology, stress response and…

Genomics · Quantitative Biology 2025-07-17 Lauren Lui , Torben Nielsen

We introduce Clinical ModernBERT, a transformer based encoder pretrained on large scale biomedical literature, clinical notes, and medical ontologies, incorporating PubMed abstracts, MIMIC IV clinical data, and medical codes with their…

Computation and Language · Computer Science 2025-04-08 Simon A. Lee , Anthony Wu , Jeffrey N. Chiang

NLP systems typically require support for more than one language. As different languages have different amounts of supervision, cross-lingual transfer benefits languages with little to no training data by transferring from other languages.…

Computation and Language · Computer Science 2022-07-13 Shijie Wu

Sequential recommendation aims to predict users' next interaction with items based on their past engagement sequence. Recently, the advent of Large Language Models (LLMs) has sparked interest in leveraging them for sequential…

Information Retrieval · Computer Science 2024-05-07 Jiayi Liao , Sihang Li , Zhengyi Yang , Jiancan Wu , Yancheng Yuan , Xiang Wang , Xiangnan He

Semantic role labeling (SRL) is a crucial task of natural language processing (NLP). Although generative decoder-based large language models (LLMs) have achieved remarkable success across various NLP tasks, they still lag behind…

Computation and Language · Computer Science 2025-06-09 Xinxin Li , Huiyao Chen , Chengjun Liu , Jing Li , Meishan Zhang , Jun Yu , Min Zhang

Recent advances in neural architectures, such as the Transformer, coupled with the emergence of large-scale pre-trained models such as BERT, have revolutionized the field of Natural Language Processing (NLP), pushing the state of the art…

Computation and Language · Computer Science 2021-09-24 Anton Chernyavskiy , Dmitry Ilvovsky , Preslav Nakov

The rising rate of drug-related deaths in the United States, largely driven by fentanyl, requires timely and accurate surveillance. However, critical overdose data are often buried in free-text coroner reports, leading to delays and…

Large Language Models (LLMs) possess vast amounts of knowledge within their parameters, prompting research into methods for locating and editing this knowledge. Previous work has largely focused on locating entity-related (often…

Computation and Language · Computer Science 2026-05-08 Lihu Chen , Adam Dejl , Francesca Toni

Bidirectional Encoder Representations from Transformers (BERT) have shown to be a promising way to dramatically improve the performance across various Natural Language Processing tasks [Devlin et al., 2019]. Meanwhile, progress made over…

Computation and Language · Computer Science 2021-03-02 Zhuo Xu

Spectral detection technology, as a non-invasive method for rapid detection of substances, combined with deep learning algorithms, has been widely used in food detection. However, in real scenarios, acquiring and labeling spectral data is…

Machine Learning · Computer Science 2022-10-25 Yansong Wang , Yundong Sun , Yansheng Fu , Dongjie Zhu , Zhaoshuo Tian

RNA plays a pivotal role in translating genetic instructions into functional outcomes, underscoring its importance in biological processes and disease mechanisms. Despite the emergence of numerous deep learning approaches for RNA,…

Quantitative Methods · Quantitative Biology 2024-12-13 Yuchen Ren , Zhiyuan Chen , Lifeng Qiao , Hongtai Jing , Yuchen Cai , Sheng Xu , Peng Ye , Xinzhu Ma , Siqi Sun , Hongliang Yan , Dong Yuan , Wanli Ouyang , Xihui Liu

Transformer architectures have facilitated the development of large-scale and general-purpose sequence models for prediction tasks in natural language processing and computer vision, e.g., GPT-3 and Swin Transformer. Although originally…

Machine Learning · Computer Science 2023-06-27 Muning Wen , Runji Lin , Hanjing Wang , Yaodong Yang , Ying Wen , Luo Mai , Jun Wang , Haifeng Zhang , Weinan Zhang
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