Related papers: Accelerating DNA Read Mapping with Digital Process…

As DRAM and other transistor-based memory technologies approach their scalability limits, alternative storage solutions like Phase-Change Memory (PCM) are gaining attention for their scalability, fast access times, and zero leakage power.…

As dynamic random access memory (DRAM) and other current transistor-based memories approach their scalability limits, the search for alternative storage methods becomes increasingly urgent. Phase-change memory (PCM) emerges as a promising…

DNA has been considered a promising medium for storing digital information. As an essential step in the DNA-based data storage workflow, coding algorithms are responsible to implement functions including bit-to-base transcoding, error…

Processing-in-memory (PIM) has emerged as an enabler for the energy-efficient and high-performance acceleration of deep learning (DL) workloads. Resistive random-access memory (ReRAM) is one of the most promising technologies to implement…

Transformer models represent the cutting edge of Deep Neural Networks (DNNs) and excel in a wide range of machine learning tasks. However, processing these models demands significant computational resources and results in a substantial…

Processing-In-Memory (PIM) architectures offer a promising approach to accelerate Graph Neural Network (GNN) training and inference. However, various PIM devices such as ReRAM, FeFET, PCM, MRAM, and SRAM exist, with each device offering…

Compute in-memory (CIM) is a promising technique that minimizes data transport, the primary performance bottleneck and energy cost of most data intensive applications. This has found wide-spread adoption in accelerating neural networks for…

The performance of today's in-memory indexes is bottlenecked by the memory latency/bandwidth wall. Processing-in-memory (PIM) is an emerging approach that potentially mitigates this bottleneck, by enabling low-latency memory access whose…

Photonics is a promising technology to accelerate Deep Neural Networks as it can use optical interconnects to reduce data movement energy and it enables low-energy, high-throughput optical-analog computations. To realize these benefits in a…

High-throughput sequencing (HTS) technologies have revolutionized the field of genomics, enabling rapid and cost-effective genome analysis for various applications. However, the increasing volume of genomic data generated by HTS…

Sequence alignment is a memory bound computation whose performance in modern systems is limited by the memory bandwidth bottleneck. Processing-in-memory architectures alleviate this bottleneck by providing the memory with computing…

Compute-in-memory (CiM) is a promising approach to improving the computing speed and energy efficiency in dataintensive applications. Beyond existing CiM techniques of bitwise logic-in-memory operations and dot product operations, this…

SRAM Processing-in-Memory (PIM) has emerged as the most promising implementation for high-performance PIM, delivering superior computing density, energy efficiency, and computational precision. However, the pursuit of higher performance…

Matting with a static background, often referred to as ``Background Matting" (BGM), has garnered significant attention within the computer vision community due to its pivotal role in various practical applications like webcasting and photo…

Bit-level sparsity in neural network models harbors immense untapped potential. Eliminating redundant calculations of randomly distributed zero-bits significantly boosts computational efficiency. Yet, traditional digital SRAM-PIM…

Architectures that incorporate Computing-in-Memory (CiM) using emerging non-volatile memory (NVM) devices have become strong contenders for deep neural network (DNN) acceleration due to their impressive energy efficiency. Yet, a significant…

Resistive random access memory (ReRAM)-based processing-in-memory (PIM) architectures have demonstrated great potential to accelerate Deep Neural Network (DNN) training/inference. However, the computational accuracy of analog PIM is…

Computationally intensive deep neural networks (DNNs) are well-suited to run on GPUs, but newly developed algorithms usually require the heavily optimized DNN routines to work efficiently, and this problem could be even more difficult for…

Many modern workloads, such as neural networks, databases, and graph processing, are fundamentally memory-bound. For such workloads, the data movement between main memory and CPU cores imposes a significant overhead in terms of both latency…

Motivation: Read mapping is a computationally expensive process and a major bottleneck in genomics analyses. The performance of read mapping is mainly limited by the performance of three key computational steps: Index Querying, Seed…