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Large Language Models (LLMs) are often used as automated judges to evaluate text, but their effectiveness can be hindered by various unintentional biases. We propose using linear classifying probes, trained by leveraging differences between…

Computation and Language · Computer Science 2025-03-25 Sharan Maiya , Yinhong Liu , Ramit Debnath , Anna Korhonen

The increasing capacities of large language models (LLMs) have been shown to present an unprecedented opportunity to scale up data analytics in the humanities and social sciences, by automating complex qualitative tasks otherwise typically…

Computation and Language · Computer Science 2024-10-22 Andres Karjus

ProMoAI is a novel tool that leverages Large Language Models (LLMs) to automatically generate process models from textual descriptions, incorporating advanced prompt engineering, error handling, and code generation techniques. Beyond…

Databases · Computer Science 2024-08-09 Humam Kourani , Alessandro Berti , Daniel Schuster , Wil M. P. van der Aalst

Distilling underlying principles from data has historically driven scientific breakthroughs. However, conventional data-driven machine learning often produces complex models that lack interpretability and generalization due to insufficient…

Materials Science · Physics 2025-07-28 Zhilong Song , Qionghua Zhou , Chunjin Ren , Chongyi Ling , Minggang Ju , Jinlan Wang

Large-scale scientific datasets -- spanning health biobanks, cell atlases, Earth reanalyses, and more -- create opportunities for exploratory discovery unconstrained by specific research questions. We term this process hypothesis hunting:…

Artificial Intelligence · Computer Science 2025-10-13 Tennison Liu , Silas Ruhrberg Estévez , David L. Bentley , Mihaela van der Schaar

Autonomous scientific research is significantly advanced thanks to the development of AI agents. One key step in this process is finding the right scientific literature, whether to explore existing knowledge for a research problem, or to…

Human preference alignment can greatly enhance Multimodal Large Language Models (MLLMs), but collecting high-quality preference data is costly. A promising solution is the self-evolution strategy, where models are iteratively trained on…

Machine Learning · Computer Science 2024-12-23 Wentao Tan , Qiong Cao , Yibing Zhan , Chao Xue , Changxing Ding

Large language models LLMs have transformed AI and achieved breakthrough performance on a wide range of tasks In science the most interesting application of LLMs is for hypothesis formation A feature of LLMs which results from their…

The rise of large language models (LLMs) has revolutionized the way that we interact with artificial intelligence systems through natural language. However, LLMs often misinterpret user queries because of their uncertain intention, leading…

Computation and Language · Computer Science 2024-02-07 Jing-Cheng Pang , Heng-Bo Fan , Pengyuan Wang , Jia-Hao Xiao , Nan Tang , Si-Hang Yang , Chengxing Jia , Sheng-Jun Huang , Yang Yu

We propose an unsupervised method for the reconstruction of protoforms i.e., ancestral word forms from which modern language forms are derived. While prior work has primarily relied on probabilistic models of phonological edits to infer…

Computation and Language · Computer Science 2025-06-13 Promise Dodzi Kpoglu

The semantic capabilities of large language models (LLMs) have the potential to enable rich analytics and reasoning over vast knowledge corpora. Unfortunately, existing systems either empirically optimize expensive LLM-powered operations…

Databases · Computer Science 2025-03-04 Liana Patel , Siddharth Jha , Melissa Pan , Harshit Gupta , Parth Asawa , Carlos Guestrin , Matei Zaharia

Advanced Persistent Threats (APTs) are prolonged, stealthy intrusions by skilled adversaries that compromise high-value systems to steal data or disrupt operations. Reconstructing complete attack chains from massive, heterogeneous logs is…

Cryptography and Security · Computer Science 2025-09-03 Rujie Dai , Peizhuo Lv , Yujiang Gui , Qiujian Lv , Yuanyuan Qiao , Yan Wang , Degang Sun , Weiqing Huang , Yingjiu Li , XiaoFeng Wang

Protein language models (PLMs) have shown promise in improving the understanding of protein sequences, contributing to advances in areas such as function prediction and protein engineering. However, training these models from scratch…

Machine Learning · Computer Science 2024-12-19 Shivasankaran Vanaja Pandi , Bharath Ramsundar

Language Models (LMs) have proven to be useful in various downstream applications, such as summarisation, translation, question answering and text classification. LMs are becoming increasingly important tools in Artificial Intelligence,…

Deep reinforcement learning has achieved impressive success in control tasks. However, its policies, represented as opaque neural networks, are often difficult for humans to understand, verify, and debug, which undermines trust and hinders…

Machine Learning · Computer Science 2026-03-11 Qinglong Hu , Xialiang Tong , Mingxuan Yuan , Fei Liu , Zhichao Lu , Qingfu Zhang

Customizing Large Language Models (LLMs) on untrusted datasets poses severe risks of injecting toxic behaviors. In this work, we introduce Optimus, a novel defense framework designed to mitigate fine-tuning harms while preserving…

Large language models (LLMs) are rapidly transforming materials science. This review examines recent LLM applications across the materials discovery pipeline, focusing on three key areas: mining scientific literature , predictive modelling,…

Computation and Language · Computer Science 2025-11-17 Fengxu Yang , Weitong Chen , Jack D. Evans

Large Language Models (LLMs) have demonstrated remarkable capabilities across various tasks, with their performance heavily dependent on the quality of input prompts. While prompt engineering has proven effective, it typically relies on…

Neural and Evolutionary Computing · Computer Science 2025-04-17 Xavier Sécheresse , Jacques-Yves Guilbert--Ly , Antoine Villedieu de Torcy

Statistical model discovery is a challenging search over a vast space of models subject to domain-specific constraints. Efficiently searching over this space requires expertise in modeling and the problem domain. Motivated by the domain…

Machine Learning · Computer Science 2024-06-25 Michael Y. Li , Emily B. Fox , Noah D. Goodman

We present Genie-CAT, a tool-augmented large-language-model (LLM) system designed to accelerate scientific hypothesis generation in protein design. Using metalloproteins (e.g., ferredoxins) as a case study, Genie-CAT integrates four…

Quantitative Methods · Quantitative Biology 2025-11-25 Bruno Jacob , Khushbu Agarwal , Marcel Baer , Peter Rice , Simone Raugei