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Since the advent of Large Language Models (LLMs), efforts have largely focused on improving their instruction-following and deductive reasoning abilities, leaving open the question of whether these models can truly discover new knowledge.…

Computation and Language · Computer Science 2025-10-31 Kaiyu He , Zhiyu Chen

Large Language Models (LLMs) have achieved significant progress across various fields and have exhibited strong potential in evolutionary computation, such as generating new solutions and automating algorithm design. Surrogate-assisted…

Neural and Evolutionary Computing · Computer Science 2024-06-18 Hao Hao , Xiaoqun Zhang , Aimin Zhou

The ability to derive underlying principles from a handful of observations and then generalize to novel situations -- known as inductive reasoning -- is central to human intelligence. Prior work suggests that language models (LMs) often…

Computation and Language · Computer Science 2024-05-24 Linlu Qiu , Liwei Jiang , Ximing Lu , Melanie Sclar , Valentina Pyatkin , Chandra Bhagavatula , Bailin Wang , Yoon Kim , Yejin Choi , Nouha Dziri , Xiang Ren

Proprietary LMs such as GPT-4 are often employed to assess the quality of responses from various LMs. However, concerns including transparency, controllability, and affordability strongly motivate the development of open-source LMs…

Computation and Language · Computer Science 2024-12-06 Seungone Kim , Juyoung Suk , Shayne Longpre , Bill Yuchen Lin , Jamin Shin , Sean Welleck , Graham Neubig , Moontae Lee , Kyungjae Lee , Minjoon Seo

Meta-analyses statistically aggregate the findings of different randomized controlled trials (RCTs) to assess treatment effectiveness. Because this yields robust estimates of treatment effectiveness, results from meta-analyses are…

Computation and Language · Computer Science 2024-07-26 Hye Sun Yun , David Pogrebitskiy , Iain J. Marshall , Byron C. Wallace

Scientific discovery in biology is difficult due to the complexity of the systems involved and the expense of obtaining high quality experimental data. Automated techniques are a promising way to make scientific discoveries at the scale and…

Quantitative Methods · Quantitative Biology 2023-06-12 Alexander H. Gower , Konstantin Korovin , Daniel Brunnsåker , Ievgeniia A. Tiukova , Ross D. King

Probing is a popular method to discern what linguistic information is contained in the representations of pre-trained language models. However, the mechanism of selecting the probe model has recently been subject to intense debate, as it is…

Computation and Language · Computer Science 2022-07-06 Jiaoda Li , Ryan Cotterell , Mrinmaya Sachan

Hallucination is a major challenge for large language models (LLMs), preventing their further application in some fields. The skeptical thinking of humankind could be useful for LLMs to self-cognition, self-reflection and alleviate their…

Computation and Language · Computer Science 2025-04-29 Yetao Wu , Yihong Wang , Teng Chen , Ningyuan Xi , Qingqing Gu , Hongyang Lei , Luo Ji

Large language models (LLMs) increasingly help people solve problems, from debugging code to repairing machinery. This process requires generating plausible hypotheses from partial descriptions, then updating them as more information…

Machine Learning · Computer Science 2026-05-08 Hua-Dong Xiong

Large Language Models (LLMs) such as GPT-4 have demonstrated their ability to understand natural language and generate complex code snippets. This paper introduces a novel Large Language Model Evolutionary Algorithm (LLaMEA) framework,…

Neural and Evolutionary Computing · Computer Science 2025-01-31 Niki van Stein , Thomas Bäck

Language models (LMs) are sentence-completion engines trained on massive corpora. LMs have emerged as a significant breakthrough in natural-language processing, providing capabilities that go far beyond sentence completion including…

Artificial Intelligence · Computer Science 2021-10-26 Robert E. Wray , III , James R. Kirk , John E. Laird

We present a modular framework powered by large language models (LLMs) that automates and streamlines key tasks across the early-stage computational drug discovery pipeline. By combining LLM reasoning with domain-specific tools, the…

This paper explores a top-down approach to automating incremental advances in machine learning research through component-level innovation, facilitated by Large Language Models (LLMs). Our framework systematically generates novel…

Machine Learning · Computer Science 2024-09-10 Shervin Ardeshir

Recent studies have demonstrated the feasibility of modeling single-cell data as natural languages and the potential of leveraging powerful large language models (LLMs) for understanding cell biology. However, a comprehensive evaluation of…

Quantitative Methods · Quantitative Biology 2025-05-14 Fan Zhang , Tianyu Liu , Zhihong Zhu , Hao Wu , Haixin Wang , Donghao Zhou , Yefeng Zheng , Kun Wang , Xian Wu , Pheng-Ann Heng

Large Language Models (LLMs) can perform various natural language processing tasks with suitable instruction prompts. However, designing effective prompts manually is challenging and time-consuming. Existing methods for automatic prompt…

Computation and Language · Computer Science 2024-04-04 Viet-Tung Do , Van-Khanh Hoang , Duy-Hung Nguyen , Shahab Sabahi , Jeff Yang , Hajime Hotta , Minh-Tien Nguyen , Hung Le

The powerful reasoning capabilities of Large Language Models (LLMs) in mathematics and coding, combined with their ability to automate complex tasks through agentic frameworks, present unprecedented opportunities for accelerating scientific…

Artificial Intelligence · Computer Science 2025-05-27 Jiabin Tang , Lianghao Xia , Zhonghang Li , Chao Huang

Recently, prompt tuning \cite{lester2021power} has gradually become a new paradigm for NLP, which only depends on the representation of the words by freezing the parameters of pre-trained language models (PLMs) to obtain remarkable…

Computation and Language · Computer Science 2022-01-31 Pan He , Yuxi Chen , Yan Wang , Yanru Zhang

Gene expression analysis holds the key to many biomedical discoveries, yet extracting insights from raw transcriptomic data remains formidable due to the complexity of multiple large, semi-structured files and the need for extensive domain…

Artificial Intelligence · Computer Science 2026-05-19 Haoyang Liu , Yijiang Li , Haohan Wang

The paper introduces a framework for the evaluation of the encoding of factual scientific knowledge, designed to streamline the manual evaluation process typically conducted by domain experts. Inferring over and extracting information from…

Computation and Language · Computer Science 2024-10-21 Magdalena Wysocka , Oskar Wysocki , Maxime Delmas , Vincent Mutel , Andre Freitas

Large language models (LLMs) have become important tools in solving biological problems, offering improvements in accuracy and adaptability over conventional methods. Several benchmarks have been proposed to evaluate the performance of…