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This paper provides a global picture about the deployment of networked processing services for genomic data sets. Many current research make an extensive use genomic data, which are massive and rapidly increasing over time. They are…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-09-27 Gianluca Reali , Mauro Femminella , Emilia Nunzi , Dario Valocchi

The ability to ask questions is important in both human and machine intelligence. Learning to ask questions helps knowledge acquisition, improves question-answering and machine reading comprehension tasks, and helps a chatbot to keep the…

Computation and Language · Computer Science 2020-03-06 Bang Liu , Haojie Wei , Di Niu , Haolan Chen , Yancheng He

Existing dialogue models may encounter scenarios which are not well-represented in the training data, and as a result generate responses that are unnatural, inappropriate, or unhelpful. We propose the "Ask an Expert" framework in which the…

Computation and Language · Computer Science 2023-05-30 Qiang Zhang , Jason Naradowsky , Yusuke Miyao

With the rise of artificial intelligence (AI) and the growing use of deep-learning architectures, the question of ethics, transparency and fairness of AI systems has become a central concern within the research community. We address…

Computation and Language · Computer Science 2020-03-19 Mahault Garnerin , Solange Rossato , Laurent Besacier

With the development of AI-Generated Content (AIGC), text-to-audio models are gaining widespread attention. However, it is challenging for these models to generate audio aligned with human preference due to the inherent information density…

Sound · Computer Science 2024-02-02 Huan Liao , Haonan Han , Kai Yang , Tianjiao Du , Rui Yang , Zunnan Xu , Qinmei Xu , Jingquan Liu , Jiasheng Lu , Xiu Li

Data scientists have relied on samples to analyze populations of interest for decades. Recently, with the increase in the number of public data repositories, sample data has become easier to access. It has not, however, become easier to…

Databases · Computer Science 2020-01-14 Laurel Orr , Samuel Ainsworth , Walter Cai , Kevin Jamieson , Magda Balazinska , Dan Suciu

We present a system that allows life-science researchers to search a linguistically annotated corpus of scientific texts using patterns over dependency graphs, as well as using patterns over token sequences and a powerful variant of boolean…

Computation and Language · Computer Science 2020-06-09 Hillel Taub-Tabib , Micah Shlain , Shoval Sadde , Dan Lahav , Matan Eyal , Yaara Cohen , Yoav Goldberg

In many biological networks the responses of individual elements are ambiguous. We consider a scenario in which many sensors respond to a shared signal, each with limited information capacity, and ask that the outputs together convey as…

Biological Physics · Physics 2025-12-30 Marianne Bauer , William Bialek

Due to HIPAA and other privacy regulations, it is imperative to maintain patient privacy while conducting research on patient health records. In this paper, we propose AegisBlock, a patient-centric access controlled framework to share…

Cryptography and Security · Computer Science 2025-08-19 Calkin Garg , Omar Rios Cruz , Tessa Andersen , Gaby G. Dagher , Donald Winiecki , Min Long

Conversational agents are consistently growing in popularity and many people interact with them every day. While many conversational agents act as personal assistants, they can have many different goals. Some are task-oriented, such as…

In large organisations, knowledge is mainly shared in meetings, which takes up significant amounts of work time. Additionally, frequent in-person meetings produce inconsistent documentation -- official minutes, personal notes, presentations…

Computation and Language · Computer Science 2025-07-23 Simon Baeuerle , Max Radyschevski , Ulrike Pado

One of the exciting capabilities of recent language models for dialog is their ability to independently search for relevant information to ground a given dialog response. However, obtaining training data to teach models how to issue search…

Computation and Language · Computer Science 2023-12-27 Yonatan Bitton , Shlomi Cohen-Ganor , Ido Hakimi , Yoad Lewenberg , Roee Aharoni , Enav Weinreb

We present MEDCOD, a Medically-Accurate, Emotive, Diverse, and Controllable Dialog system with a unique approach to the natural language generator module. MEDCOD has been developed and evaluated specifically for the history taking task. It…

Computation and Language · Computer Science 2021-11-19 Rhys Compton , Ilya Valmianski , Li Deng , Costa Huang , Namit Katariya , Xavier Amatriain , Anitha Kannan

Retrieval-Augmented-Generation and Generation-Augmented-Generation have been proposed to enhance the knowledge required for question answering with Large Language Models (LLMs) by leveraging richer context. However, the former relies on…

Computation and Language · Computer Science 2024-12-17 Huanxuan Liao , Shizhu He , Yao Xu , Yuanzhe Zhang , Kang Liu , Shengping Liu , Jun Zhao

Medical Question Answering systems based on Retrieval Augmented Generation is promising for clinical decision support because they can integrate external knowledge, thus reducing inaccuracies inherent in standalone large language models…

Computation and Language · Computer Science 2025-03-28 Yuelyu Ji , Hang Zhang , Yanshan Wang

The language commonly used in human genetics can inadvertently pose problems for multiple reasons. Terms like "ancestry", "ethnicity", and other ways of grouping people can have complex, often poorly understood, or multiple meanings within…

Populations and Evolution · Quantitative Biology 2021-06-21 Ewan Birney , Michael Inouye , Jennifer Raff , Adam Rutherford , Aylwyn Scally

The COVID-19 crisis has demonstrated the potential of cutting-edge genomics research. However, privacy of these sensitive pieces of information is an area of significant concern for genomics researchers. The current security models makes it…

Cryptography and Security · Computer Science 2022-04-15 David Reddick , Justin Presley , F. Alex Feltus , Susmit Shannigrahi

A key trait of daily conversations between individuals is the ability to express empathy towards others, and exploring ways to implement empathy is a crucial step towards human-like dialogue systems. Previous approaches on this topic mainly…

Computation and Language · Computer Science 2023-02-02 Sahand Sabour , Chujie Zheng , Minlie Huang

Rapid advances in human genomics are enabling researchers to gain a better understanding of the role of the genome in our health and well-being, stimulating hope for more effective and cost efficient healthcare. However, this also prompts a…

Cryptography and Security · Computer Science 2018-08-20 Alexandros Mittos , Bradley Malin , Emiliano De Cristofaro

Open-Domain Generative Question Answering has achieved impressive performance in English by combining document-level retrieval with answer generation. These approaches, which we refer to as GenQA, can generate complete sentences,…

Computation and Language · Computer Science 2022-12-20 Benjamin Muller , Luca Soldaini , Rik Koncel-Kedziorski , Eric Lind , Alessandro Moschitti