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Deprivation of essential nutrients can have stark consequences for many processes in a cell. We consider amino acid starvation, which can result in bottlenecks in mRNA translation when ribosomes stall due to lack of resources, i.e. tRNAs…

Subcellular Processes · Quantitative Biology 2015-11-06 Frank S Heldt , Chris A Brackley , Celso Grebogi , Marco Thiel

This paper presents, implements, and evaluates a power-regulation technique for multicore processors, based on an integral controller with adjustable gain. The gain is designed for wide stability margins, and computed in real time as part…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-15 X. Chen , Y. Wardi , S. Yalamanchili

With the introduction of cyber-physical genome sequencing and editing technologies, such as CRISPR, researchers can more easily access tools to investigate and create remedies for a variety of topics in genetics and health science (e.g.…

Machine Learning · Computer Science 2026-02-19 Joseph Bingham , Netanel Arussy , Saman Zonouz

MicroRNAs (miRNAs) are small endogenous regulatory molecules that modulate gene expression post-transcriptionally. Although differential expression of miRNAs have been implicated in many diseases (including cancers), the underlying…

Genomics · Quantitative Biology 2018-01-09 Gary Wilk , Rosemary Braun

Reactive power sharing and containment of voltages within limits for inverter-based resources (IBRs) are two important, yet coupled objectives in ac networks. In this article, we propose a distributed control technique to simultaneously…

Systems and Control · Electrical Eng. & Systems 2023-08-29 Babak Abdolmaleki , John W. Simpson-Porco , Gilbert Bergna-Diaz

Living organisms must respond to environmental changes. Generally, accurate and rapid responses are provided by simple, unidirectional networks that connect inputs with outputs. Besides accuracy and speed, biological responses should also…

Molecular Networks · Quantitative Biology 2021-09-01 Masayo Inoue , Kunihiko Kaneko

Domain-specific accelerators are used in various computing systems ranging from edge devices to data centers. Coarse-grained reconfigurable arrays (CGRAs) represent an architectural midpoint between the flexibility of an FPGA and the…

Hardware Architecture · Computer Science 2023-01-04 Taeyoung Kong , Kalhan Koul , Priyanka Raina , Mark Horowitz , Christopher Torng

Control theory has seen recently impactful applications in network science, especially in connections with applications in network medicine. A key topic of research is that of finding minimal external interventions that offer control over…

Molecular Networks · Quantitative Biology 2020-07-10 Victor-Bogdan Popescu , Krishna Kanhaiya , Iulian Năstac , Eugen Czeizler , Ion Petre

Coarse Grained Reconfigurable Arrays (CGRAs) present both high flexibility and efficiency, making them well-suited for the acceleration of intensive workloads. Nevertheless, a key barrier towards their widespread adoption is posed by CGRA…

Software Engineering · Computer Science 2025-09-22 Yuxuan Wang , Cristian Tirelli , Giovanni Ansaloni , Laura Pozzi , David Atienza

In this paper, a flexibility-oriented microgrid optimal scheduling model is proposed to mitigate distribution network net load variability caused by large penetration distributed solar generation. The distributed solar generation…

Systems and Control · Computer Science 2016-08-17 Alireza Majzoobi , Amin Khodaei

Inspired by the effectiveness of genetic algorithms and the importance of synthesizability in molecular design, we present SynGA, a simple genetic algorithm that operates directly over synthesis routes. Our method features custom crossover…

Machine Learning · Computer Science 2026-03-03 Alston Lo , Connor W. Coley , Wojciech Matusik

Layered control architectures have been a standard paradigm for efficiently managing complex constrained systems. A typical architecture consists of: i) a higher layer, where a low-frequency planner controls a simple model of the system,…

Systems and Control · Electrical Eng. & Systems 2025-04-15 Charis Stamouli , Anastasios Tsiamis , Manfred Morari , George J. Pappas

The response of complex networks to perturbations is of utmost importance in areas as diverse as ecosystem management, emergency response, and cell reprogramming. A fundamental property of networks is that the perturbation of one node can…

Molecular Networks · Quantitative Biology 2011-05-20 Sean P. Cornelius , William L. Kath , Adilson E. Motter

We propose novel iterative learning control algorithms to track a reference trajectory in resource-constrained control systems. In many applications, there are constraints on the number of control actions, delivered to the actuator from the…

Optimization and Control · Mathematics 2017-09-29 Burak Demirel , Euhanna Ghadimi , Daniel E. Quevedo

As mobile networks proliferate, we are experiencing a strong diversification of services, which requires greater flexibility from the existing network. Network slicing is proposed as a promising solution for resource utilization in 5G and…

Networking and Internet Architecture · Computer Science 2021-11-17 Yongshuai Liu , Jiaxin Ding , Zhi-Li Zhang , Xin Liu

MicroRNAs (miRNAs) critically modulate stem cell properties like pluripotency, but the fundamental mechanism remains largely unknown. This study systematically analyzes multiple-omics data and builds a systems physical network including…

Molecular Networks · Quantitative Biology 2014-08-14 Anyou Wang

Small regulatory RNAs (sRNAs) are short non-coding RNAs in bacteria capable of post-transcriptional regulation. sRNAs have recently gained attention as tools in basic and applied sciences for example to fine-tune genetic circuits or…

Quantitative Methods · Quantitative Biology 2024-04-18 Michel Brueck , Bork A. Berghoff , Daniel Schindler

Numerous transcription factors self-assemble into different order oligomeric species in a way that is actively regulated by the cell. Until now, no general functional role has been identified for this widespread process. Here we capture the…

Molecular Networks · Quantitative Biology 2011-05-26 Jose M. G. Vilar , Leonor Saiz

MicroRNAs (miRNAs) are endogenous 22-nucleotide RNAs, which suppress gene expression by selectively binding to the 3-noncoding region of specific message RNAs through base-pairing. Given the diversity and abundance of miRNA targets, miRNAs…

Molecular Networks · Quantitative Biology 2007-05-23 Qinghua Cui , Zhenbao Yu , Enrico O. Purisima , Edwin Wang

The aim of this paper is to shed light on the problem of controlling a complex network with minimal control energy. We show first that the control energy depends on the time constant of the modes of the network, and that the closer the…

Systems and Control · Computer Science 2018-03-12 Gustav Lindmark , Claudio Altafini