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Communication of signals among nodes in a complex network poses fundamental problems of efficiency and cost. Routing of messages along shortest paths requires global information about the topology, while spreading by diffusion, which…

Neurons and Cognition · Quantitative Biology 2019-06-19 Andrea Avena-Koenigsberger , Xiaoran Yan , Artemy Kolchinsky , Martijn van den Heuvel , Patric Hagmann , Olaf Sporns

The stability of ecosystems as well as the relation between topology and dynamics on multilayer networks are important questions that are usually discussed in separate communities. Here, we combine these two topics by investigating the…

Populations and Evolution · Quantitative Biology 2015-07-24 Jonas Richhardt , Sebastian Plitzko , Florian Schwarzmüller , Barbara Drossel

The organizations of insect societies, such as division of labor, task allocation, collective regulation, mass action responses, have been considered as main reasons for the ecological success. In this article, we propose and study a…

Populations and Evolution · Quantitative Biology 2015-11-17 Yun Kang , Guy Theraulaz

Physarum polycephalum is a large single amoeba cell, which in its plasmodial phase,forages and connects nearby food sources with protoplasmic tubes. The organism forages for food by growing these tubes towards detected food stuffs, this…

Emerging Technologies · Computer Science 2014-06-10 James G. H. Whiting , Ben P. J. de Lacy Costello , Andrew Adamatzky

Dormancy is a widespread adaptive strategy that enables populations to persist in fluctuating environments, yet how its benefits depend on the temporal structure of environmental variability remains unclear. We examine how dormancy…

Populations and Evolution · Quantitative Biology 2025-12-08 Jorge Hidalgo , Lorenzo Fant , Rafael Rubio de Casas , Miguel A. Muñoz

Evolutionary models are used to study the self-organisation of collective action, often incorporating population structure due to its ubiquitous presence and long-known impact on emerging phenomena. We investigate the evolution of…

Populations and Evolution · Quantitative Biology 2023-04-20 Diogo L. Pires , Igor Erovenko , Mark Broom

The evolution of complex transport networks is investigated under three strategies of link removal: random, intentional attack and "Pseudo-Darwinian" strategy. At each evolution step and regarding the selected strategy, one removes either a…

Physics and Society · Physics 2021-10-14 Geoffroy Berthelot , Liubov Tupikina , Min-Yeong Kang , Bernard Sapoval , Denis S. Grebenkov

Ecological networks allow us to study the structure and function of ecosystems and gain insights on species resilience/stability. The study of this ecological networks is usually a snapshop focused in a limited specific range of space and…

Populations and Evolution · Quantitative Biology 2014-07-17 Andrzej Jarynowski , Fco. Alejandro Lopez-Nunez , Han Fan

Many microbial systems are known to actively reshape their proteomes in response to changes in growth conditions induced e.g. by nutritional stress or antibiotics. Part of the re-allocation accounts for the fact that, as the growth rate is…

Molecular Networks · Quantitative Biology 2017-03-03 Matteo Mori , Enzo Marinari , Andrea De Martino

An organism that is newly introduced into an existing population has a survival probability that is dependent on both the population density of its environment and the competition it experiences with the members of that population.…

Populations and Evolution · Quantitative Biology 2024-12-17 Jason M. Gray , Rowan J. Barker-Clarke , Jacob G. Scott , Michael Hinczewski

The evolution of leadership in migratory populations depends not only on costs and benefits of leadership investments but also on the opportunities for individuals to rely on cues from others through social interactions. We derive an…

Adaptation and Self-Organizing Systems · Physics 2013-05-17 Darren Pais , Naomi Ehrich Leonard

Plasmodium of acellular slime mould Physarum polycephalum is a very large eukaryotic microbe visible to the unaided eye. During its foraging behaviour the plasmodium spans sources of nutrients with a network of protoplasmic tubes. In this…

Adaptation and Self-Organizing Systems · Physics 2012-09-14 Andrew Adamatzky , Michael Lees , Peter M. A. Sloot

Biological neural networks operate in the presence of task disruptions as they guide organisms toward goals. A familiar stream of stimulus-response causations can be disrupted by subtask streams imposed by the environment. For example,…

Machine Learning · Computer Science 2022-07-15 Thomas E. Portegys

Biological transport networks adapt through dynamic interactions between material transport and structural modification during growth and development. In this work, we present a model of transport network growth driven by local material…

Biological Physics · Physics 2025-03-27 Chanoknun Sintavanuruk , Yoichiro Mori , Reza Farhadifar , Eleni Katifori

We investigate the application of mesoscopic response functions (MRFs) to characterize a large set of networks of fungi and slime moulds grown under a wide variety of different experimental treatments, including inter-species competition…

Quantitative Methods · Quantitative Biology 2017-03-03 Sang Hoon Lee , Mark D. Fricker , Mason A. Porter

The self-organization of microbial ecosystems involves a large variety of mechanisms, ranging from biochemical signaling to population dynamics. Among these, the role of motility regulation has been little studied, despite the importance of…

Statistical Mechanics · Physics 2025-03-18 Alberto Dinelli , Ada Altieri , Julien Tailleur

Recent works suggest that pooling and sharing may constitute a fundamental mechanism for the evolution of cooperation in well-mixed fluctuating environments. The rationale is that, by reducing the amplitude of fluctuations, pooling and…

Adaptation and Self-Organizing Systems · Physics 2019-07-03 Viktor Stojkoski , Zoran Utkovski , Lasko Basnarkov , Ljupco Kocarev

Transport networks are crucial to the functioning of natural systems and technological infrastructures. For flow networks in many scenarios, such as rivers or blood vessels, acyclic networks (i.e., trees) are optimal structures when…

Adaptation and Self-Organizing Systems · Physics 2019-12-05 Erik Andreas Martens , Konstantin Klemm

Understanding species dynamics in heterogeneous environments is essential for ecosystem studies. Traditional models assumed homogeneous habitats, but recent approaches include spatial and temporal variability, highlighting species…

Populations and Evolution · Quantitative Biology 2024-10-25 Wonhyung Choi , Inkyung Ahn

Migratory and tissue resident cells exhibit highly branched morphologies to perform their function and to adapt to the microenvironment. Immune cells, for example, display transient branched shapes while exploring the surrounding tissues.…

Biological Physics · Physics 2024-04-02 Jiayi Liu , Javier Boix-Campos , Jonathan E. Ron , Johan M. Kux , Nir S. Gov , Pablo J. Sáez
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