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Inspired by studies on airline networks we propose a general model for weighted networks in which topological growth and weight dynamics are both determined by cost adversarial mechanism. Since transportation networks are designed and…

Physics and Society · Physics 2007-12-10 Yihong Hu , Daoli Zhu , Yang Li , Bing Su , Bingxin Zhu

Using a simple model for the trail formation of ants, the relation between i)the schedule of feeding which represents the unsteady natural environment, ii)emerging patterns of trails connecting a nest with food resources, and iii)the…

Populations and Evolution · Quantitative Biology 2009-11-10 Tomomi Tao , Hiroyuki Nakagawa , Masato Yamasaki , Hiraku Nishimori

The effect of phenotypic plasticity on evolution, the so-called Baldwin effect, has been studied extensively for more than 100 years. Plasticity is known to influence the speed of evolution towards a specific genetic configuration, but…

Populations and Evolution · Quantitative Biology 2017-12-27 Stefano Bennati , Leonel Aguilar , Dirk Helbing

Individuals of different types, may it be genetic, cultural, or else, with different levels of fitness often compete for reproduction and survival. A fitter type generally has higher chances of disseminating their copies to other…

Physics and Society · Physics 2009-04-24 Naoki Masuda

A microscopic agent dynamical model for diploid age-structured populations is used to study evolution of polymorphism and sympatric speciation. The underlying ecology is represented by a unimodal distribution of resources of some width.…

Populations and Evolution · Quantitative Biology 2015-06-26 E. Brigatti , J. S. Sa' Martins , I. Roditi

Social insects are ecologically and evolutionarily most successful organisms on earth, which can achieve robust collective behaviors through local interactions among group members. Colony migration has been considered as a leading example…

Dynamical Systems · Mathematics 2022-06-15 Lisha Wang , Zhipeng Qiu , Takao Sasaki , Yun Kang

Evolution depends on the possibility of successfully exploring fitness landscapes via mutation and recombination. With these search procedures, exploration is difficult in "rugged" fitness landscapes, where small mutations can drastically…

Adaptation and Self-Organizing Systems · Physics 2016-09-08 Carlos Gershenson , Stuart A. Kauffman , Ilya Shmulevich

We study the spatial rock-paper-scissors model, where resource competitors' cyclic dominance impacts organisms' energy levels. Our model assumes that failed selection interactions can lead to energy loss, reducing the chances of success in…

Populations and Evolution · Quantitative Biology 2023-06-06 J. Menezes , E. Rangel

Biological populations are subject to fluctuating environmental conditions. Different adaptive strategies can allow them to cope with these fluctuations: specialization to one particular environmental condition, adoption of a generalist…

Populations and Evolution · Quantitative Biology 2017-09-27 Andreas Mayer , Thierry Mora , Olivier Rivoire , Aleksandra M. Walczak

Transport networks are crucial for the functioning of natural and technological systems. We study a mathematical model of vascular network adaptation, where the network structure dynamically adjusts to changes in blood flow and pressure.…

Adaptation and Self-Organizing Systems · Physics 2023-06-01 Konstantin Klemm , Erik Andreas Martens

Change is a fundamental ingredient of interaction patterns in biology, technology, the economy, and science itself: Interactions within and between organisms change; transportation patterns by air, land, and sea all change; the global…

Physics and Society · Physics 2010-10-07 M. Rosvall , C. T. Bergstrom

Signaling pathways and networks determine the ability to communicate in systems ranging from living cells to human society. We investigate how the network structure constrains communication in social-, man-made and biological networks. We…

Disordered Systems and Neural Networks · Physics 2007-05-23 K. Sneppen , A. Trusina , M. Rosvall

In many biological systems, the movement of individual agents is commonly characterized as having multiple qualitatively distinct behaviors that arise from various biophysical states. This is true for vesicles in intracellular transport,…

Subcellular Processes · Quantitative Biology 2022-07-25 Maria-Veronica Ciocanel , John Fricks , Peter R. Kramer , Scott A. McKinley

Evolution occurs in populations of reproducing individuals. It is well known that population structure can affect evolutionary dynamics. Traditionally, natural selection is studied between mutants that differ in reproductive rate, but are…

Populations and Evolution · Quantitative Biology 2021-11-23 Josef Tkadlec , Kamran Kaveh , Krishnendu Chatterjee , Martin A. Nowak

Understanding the role of network structure in the evolution of cooperation is a key research goal at the intersection between physics and biology. Recent studies have particularly focused on multiplex networks given that multiple social…

Physics and Society · Physics 2020-07-27 Hirofumi Takesue

Populations evolving in fluctuating environments face the fundamental challenge of balancing adaptation to current conditions against preparation for uncertain futures. Here, we study microbial evolution in partially predictable…

Populations and Evolution · Quantitative Biology 2025-08-04 Roaa Mohmmed Yagb Omer , Onofrio Mazzarisi , Martina Dal Bello , Jacopo Grilli

The actin cytoskeleton is a key component in the machinery of eukaryotic cells, and it selfassembles out of equilibrium into a wide variety of biologically crucial structures. While the molecular mechanisms involved are well characterized,…

Soft Condensed Matter · Physics 2017-01-04 Giulia Foffano , Nicolas Levernier , Martin Lenz

The costs associated to the length of links impose unavoidable constraints to the growth of natural and artificial transport networks. When future network developments can not be predicted, building and maintenance costs require competing…

Physics and Society · Physics 2017-10-04 Arianna Bottinelli , Remi Louf , Marco Gherardi

Humans are increasingly stressing ecosystems via habitat destruction, climate change and global population movements leading to the widespread loss of biodiversity and the disruption of key ecological services. Ecosystems characterized…

Populations and Evolution · Quantitative Biology 2018-11-27 Udit Bhatia , Tarik Gouhier , Auroop Ratan Ganguly

Natural selection and random drift are competing phenomena for explaining the evolution of populations. Combining a highly fit mutant with a population structure that improves the odds that the mutant spreads through the whole population…

Populations and Evolution · Quantitative Biology 2009-08-14 Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza
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