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In this paper, we study trade-offs between efficiency, cost and accuracy when pre-training Transformer encoders with different pre-training objectives. For this purpose, we analyze features of common objectives and combine them to create…

Computation and Language · Computer Science 2022-10-26 Luca Di Liello , Matteo Gabburo , Alessandro Moschitti

Large-scale pre-trained language models such as BERT have contributed significantly to the development of NLP. However, those models require large computational resources, making it difficult to be applied to mobile devices where computing…

Computation and Language · Computer Science 2023-08-02 Weixin Wu , Hankz Hankui Zhuo

Although BERT-style encoder models are heavily used in NLP research, many researchers do not pretrain their own BERTs from scratch due to the high cost of training. In the past half-decade since BERT first rose to prominence, many advances…

Computation and Language · Computer Science 2024-01-17 Jacob Portes , Alex Trott , Sam Havens , Daniel King , Abhinav Venigalla , Moin Nadeem , Nikhil Sardana , Daya Khudia , Jonathan Frankle

Directed evolution as a widely-used engineering strategy faces obstacles in finding desired mutants from the massive size of candidate modifications. While deep learning methods learn protein contexts to establish feasible searching space,…

Quantitative Methods · Quantitative Biology 2023-04-18 Bingxin Zhou , Outongyi Lv , Kai Yi , Xinye Xiong , Pan Tan , Liang Hong , Yu Guang Wang

Transfer learning in natural language processing (NLP), as realized using models like BERT (Bi-directional Encoder Representation from Transformer), has significantly improved language representation with models that can tackle challenging…

Hardware Architecture · Computer Science 2021-04-20 Suchita Pati , Shaizeen Aga , Nuwan Jayasena , Matthew D. Sinclair

We present a simple way to merge masked language modeling with causal language modeling. This hybrid training objective results in a model that combines the strengths of both modeling paradigms within a single transformer stack: GPT-BERT…

Computation and Language · Computer Science 2024-12-31 Lucas Georges Gabriel Charpentier , David Samuel

Masked language modeling (MLM) pre-training methods such as BERT corrupt the input by replacing some tokens with [MASK] and then train a model to reconstruct the original tokens. While they produce good results when transferred to…

Computation and Language · Computer Science 2020-03-25 Kevin Clark , Minh-Thang Luong , Quoc V. Le , Christopher D. Manning

We apply a Transformer architecture, specifically BERT, to learn flexible and high quality molecular representations for drug discovery problems. We study the impact of using different combinations of self-supervised tasks for pre-training,…

Machine Learning · Computer Science 2020-11-30 Benedek Fabian , Thomas Edlich , Héléna Gaspar , Marwin Segler , Joshua Meyers , Marco Fiscato , Mohamed Ahmed

Transformer-based neural models are used in many AI applications. Training these models is expensive, as it takes huge GPU resources and long duration. It is challenging because typical data like sentences have variable lengths, and…

Computation and Language · Computer Science 2022-06-17 Xiaohui Wang , Yang Wei , Ying Xiong , Guyue Huang , Xian Qian , Yufei Ding , Mingxuan Wang , Lei Li

Language model pre-training has proven to be useful in learning universal language representations. As a state-of-the-art language model pre-training model, BERT (Bidirectional Encoder Representations from Transformers) has achieved amazing…

Computation and Language · Computer Science 2020-02-06 Chi Sun , Xipeng Qiu , Yige Xu , Xuanjing Huang

Recent years have seen a phenomenal rise in performance and applications of transformer neural networks. The family of transformer networks, including Bidirectional Encoder Representations from Transformer (BERT), Generative Pretrained…

Machine Learning · Computer Science 2023-07-18 Krishna Teja Chitty-Venkata , Sparsh Mittal , Murali Emani , Venkatram Vishwanath , Arun K. Somani

Can pre-trained BERT for one language and GPT for another be glued together to translate texts? Self-supervised training using only monolingual data has led to the success of pre-trained (masked) language models in many NLP tasks. However,…

Computation and Language · Computer Science 2021-09-14 Zewei Sun , Mingxuan Wang , Lei Li

Intelligent Tutoring Systems (ITSs) have significantly enhanced adult literacy training, a key factor for societal participation, employment opportunities, and lifelong learning. Our study investigates the application of advanced AI models,…

Computers and Society · Computer Science 2024-03-25 Liang Zhang , Jionghao Lin , Conrad Borchers , John Sabatini , John Hollander , Meng Cao , Xiangen Hu

This paper presents the overview of the development and fine-tuning of large language models (LLMs) designed specifically for answering medical questions. We are mainly improving the accuracy and efficiency of providing reliable answers to…

Computation and Language · Computer Science 2025-01-30 Aysegul Ucar , Soumik Nayak , Anunak Roy , Burak Taşcı , Gülay Taşcı

Large-scale Protein Language Models (PLMs) have improved performance in protein prediction tasks, ranging from 3D structure prediction to various function predictions. In particular, AlphaFold, a ground-breaking AI system, could potentially…

Quantitative Methods · Quantitative Biology 2022-10-18 Mingyang Hu , Fajie Yuan , Kevin K. Yang , Fusong Ju , Jin Su , Hui Wang , Fei Yang , Qiuyang Ding

Heavily overparameterized language models such as BERT, XLNet and T5 have achieved impressive success in many NLP tasks. However, their high model complexity requires enormous computation resources and extremely long training time for both…

Computation and Language · Computer Science 2021-06-09 Xiaohan Chen , Yu Cheng , Shuohang Wang , Zhe Gan , Zhangyang Wang , Jingjing Liu

Large-scale Transformer models have significantly promoted the recent development of natural language processing applications. However, little effort has been made to unify the effective models. In this paper, driven by providing a new set…

Computation and Language · Computer Science 2022-04-12 Dezhou Shen

Artificial intelligence (AI) is anticipated to emerge as a pivotal enabler for the forthcoming sixth-generation (6G) wireless communication systems. However, current research efforts regarding large AI models for wireless communications…

Systems and Control · Electrical Eng. & Systems 2025-09-16 Yuhang Li , Yang Lu , Wei Chen , Bo Ai , Zhiguo Ding , Dusit Niyato

Designing protein mutants of both high stability and activity is a critical yet challenging task in protein engineering. Here, we introduce PRIME, a deep learning model, which can suggest protein mutants of improved stability and activity…

The increasing size of large language models (LLMs) has introduced challenges in their training and inference. Removing model components is perceived as a solution to tackle the large model sizes, however, existing pruning methods solely…

Computation and Language · Computer Science 2023-12-27 Abdelrahman Zayed , Goncalo Mordido , Samira Shabanian , Ioana Baldini , Sarath Chandar