English
Related papers

Related papers: GeneAgent: Self-verification Language Agent for Ge…

200 papers

Chemical reasoning usually involves complex, multi-step processes that demand precise calculations, where even minor errors can lead to cascading failures. Furthermore, large language models (LLMs) encounter difficulties handling…

Computation and Language · Computer Science 2025-01-14 Xiangru Tang , Tianyu Hu , Muyang Ye , Yanjun Shao , Xunjian Yin , Siru Ouyang , Wangchunshu Zhou , Pan Lu , Zhuosheng Zhang , Yilun Zhao , Arman Cohan , Mark Gerstein

Genomic question answering often requires complex reasoning and integration across diverse biomedical sources. GeneGPT addressed this challenge by combining domain-specific APIs with OpenAI's code-davinci-002 large language model to enable…

Artificial Intelligence · Computer Science 2025-11-20 Haodong Chen , Guido Zuccon , Teerapong Leelanupab

In this paper, we aim to improve the reasoning ability of large language models (LLMs) over knowledge graphs (KGs) to answer complex questions. Inspired by existing methods that design the interaction strategy between LLMs and KG, we…

Computation and Language · Computer Science 2024-02-20 Jinhao Jiang , Kun Zhou , Wayne Xin Zhao , Yang Song , Chen Zhu , Hengshu Zhu , Ji-Rong Wen

Large language models (LLMs) are being used in data science code generation tasks, but they often struggle with complex sequential tasks, leading to logical errors. Their application to geospatial data processing is particularly challenging…

Computers and Society · Computer Science 2024-10-28 Yuxing Chen , Weijie Wang , Sylvain Lobry , Camille Kurtz

As large language models reshape scientific research, literature retrieval faces a twofold challenge: ensuring source authenticity while maintaining a deep comprehension of academic search intents. While reliable, traditional…

Information Retrieval · Computer Science 2026-05-15 Yuwen Du , Tian Jin , Jing Kang , Xianghe Pang , Jingyi Chai , Tingjia Miao , Fenyi Liu , WenHao Wang , Sikai Yao , Yuzhi Zhang , Siheng Chen

Recent progress in natural language processing (NLP) owes much to remarkable advances in large language models (LLMs). Nevertheless, LLMs frequently "hallucinate," resulting in non-factual outputs. Our carefully-designed human evaluation…

Computation and Language · Computer Science 2024-03-22 Jian Guan , Jesse Dodge , David Wadden , Minlie Huang , Hao Peng

Large language models accelerate literature synthesis but can hallucinate and mis-cite, limiting their usefulness in expert workflows. We present RA-FSM (Research Assistant - Finite State Machine), a modular GPT-based research assistant…

Computation and Language · Computer Science 2025-10-06 Vivek Bhavsar , Joseph Ereifej , Aravanan Gurusami

Scientific data visualization plays a crucial role in research by enabling the direct display of complex information and assisting researchers in identifying implicit patterns. Despite its importance, the use of Large Language Models (LLMs)…

Computation and Language · Computer Science 2024-03-20 Zhiyu Yang , Zihan Zhou , Shuo Wang , Xin Cong , Xu Han , Yukun Yan , Zhenghao Liu , Zhixing Tan , Pengyuan Liu , Dong Yu , Zhiyuan Liu , Xiaodong Shi , Maosong Sun

Visual Language Models (VLMs) achieve promising results in medical reasoning but struggle with hallucinations, vague descriptions, inconsistent logic and poor localization. To address this, we propose a agent framework named Medical Visual…

Artificial Intelligence · Computer Science 2025-10-22 Guangfu Guo , Xiaoqian Lu , Yue Feng

The gene set analysis (GSA) is a foundational approach for uncovering the molecular functions associated with a group of genes. Recently, LLM-powered methods have emerged to annotate gene sets with biological functions together with…

Genomics · Quantitative Biology 2025-09-16 Zhizheng Wang , Yifan Yang , Qiao Jin , Zhiyong Lu

Software testing is an important part of the development cycle, yet it requires specialized expertise and substantial developer effort to adequately test software. Recent discoveries of the capabilities of large language models (LLMs)…

Software Engineering · Computer Science 2023-09-06 Robert Feldt , Sungmin Kang , Juyeon Yoon , Shin Yoo

Employing Large Language Models (LLMs) for semantic parsing has achieved remarkable success. However, we find existing methods fall short in terms of reliability and efficiency when hallucinations are encountered. In this paper, we address…

Computation and Language · Computer Science 2024-06-14 Xiang Huang , Sitao Cheng , Shanshan Huang , Jiayu Shen , Yong Xu , Chaoyun Zhang , Yuzhong Qu

Large Language Models (LLMs) have advanced machine translation but remain vulnerable to hallucinations. Unfortunately, existing MT benchmarks are not capable of exposing failures in multilingual LLMs. To disclose hallucination in…

Computation and Language · Computer Science 2025-10-29 Xinwei Wu , Heng Liu , Jiang Zhou , Xiaohu Zhao , Linlong Xu , Longyue Wang , Weihua Luo , Kaifu Zhang

Large language models (LLMs) excel at natural language tasks but are limited by their static parametric knowledge, especially in knowledge-intensive task. Retrieval-augmented generation (RAG) mitigates this by integrating external…

Artificial Intelligence · Computer Science 2025-10-10 Yi Jiang , Lei Shen , Lujie Niu , Sendong Zhao , Wenbo Su , Bo Zheng

Large Language Models (LLMs) have emerged as powerful tools for accelerating scientific discovery, yet their static knowledge and hallucination issues hinder autonomous research applications. Recent advances integrate LLMs into agentic…

Artificial Intelligence · Computer Science 2025-12-23 Zeyu Xia , Jinzhe Ma , Congjie Zheng , Shufei Zhang , Yuqiang Li , Hang Su , P. Hu , Changshui Zhang , Xingao Gong , Wanli Ouyang , Lei Bai , Dongzhan Zhou , Mao Su

Is automated hallucination detection possible? In this work, we introduce a theoretical framework to analyze the feasibility of automatically detecting hallucinations produced by large language models (LLMs). Inspired by the classical…

Machine Learning · Computer Science 2025-06-03 Amin Karbasi , Omar Montasser , John Sous , Grigoris Velegkas

Pursuing artificial intelligence for biomedical science, a.k.a. AI Scientist, draws increasing attention, where one common approach is to build a copilot agent driven by Large Language Models (LLMs). However, to evaluate such systems,…

Computation and Language · Computer Science 2024-07-02 Xinna Lin , Siqi Ma , Junjie Shan , Xiaojing Zhang , Shell Xu Hu , Tiannan Guo , Stan Z. Li , Kaicheng Yu

Large language models (LLMs) show promise for healthcare question answering, but clinical use is limited by weak verification, insufficient evidence grounding, and unreliable confidence signalling. We propose a multi-agent medical QA…

Computation and Language · Computer Science 2026-02-17 Naeimeh Nourmohammadi , Md Meem Hossain , The Anh Han , Safina Showkat Ara , Zia Ush Shamszaman

Large Language Models (LLMs) have demonstrated remarkable capabilities across diverse applications, from open-domain question answering to scientific writing, medical decision support, and legal analysis. However, their tendency to generate…

Computation and Language · Computer Science 2025-12-30 Diyana Muhammed , Giusy Giulia Tuccari , Gollam Rabby , Sören Auer , Sahar Vahdati

Large Language Models (LLMs) excel at code-related tasks but often struggle in realistic software repositories, where project-specific APIs and cross-file dependencies are crucial. Retrieval-augmented methods mitigate this by injecting…

Software Engineering · Computer Science 2026-04-22 George Ma , Anurag Koul , Qi Chen , Yawen Wu , Sachit Kuhar , Yu Yu , Aritra Sengupta , Varun Kumar , Murali Krishna Ramanathan