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Recent advances in large language models (LLMs) offer promising potential for automating formal methods. However, applying them to formal verification remains challenging due to the complexity of specification languages, the risk of…

Software Engineering · Computer Science 2025-09-30 Xinyue Zuo , Yifan Zhang , Hongshu Wang , Yufan Cai , Zhe Hou , Jing Sun , Jin Song Dong

Multimodal neuroimaging analysis often involves complex, modality-specific preprocessing workflows that require careful configuration, quality control, and coordination across heterogeneous toolchains. Beyond preprocessing, downstream…

Artificial Intelligence · Computer Science 2026-05-08 Lujia Zhong , Yihao Xia , Jianwei Zhang , Shuo huang , Jiaxin Yue , Mingyang Xia , Yonggang Shi

The proliferation of large language models (LLMs) and their integration into multi-agent systems has paved the way for sophisticated automation in various domains. This paper introduces AutoGenesisAgent, a multi-agent system that…

Multiagent Systems · Computer Science 2024-04-29 Jeremy Harper

Large Language Models (LLMs) and multi-agent systems have shown impressive capabilities in natural language tasks but face challenges in clinical trial applications, primarily due to limited access to external knowledge. Recognizing the…

Computation and Language · Computer Science 2024-07-23 Ling Yue , Sixue Xing , Jintai Chen , Tianfan Fu

We present a multi-agent system for automation of scientific research tasks, cmbagent (https://github.com/CMBAgents/cmbagent). The system is formed by about 30 Large Language Model (LLM) agents and implements a Planning & Control strategy…

Hallucination remains a critical bottleneck for large language models (LLMs), undermining their reliability in real-world applications, especially in Retrieval-Augmented Generation (RAG) systems. While existing hallucination detection…

Computation and Language · Computer Science 2026-03-26 Zhuo Li , Yupeng Zhang , Pengyu Cheng , Jiajun Song , Mengyu Zhou , Hao Li , Shujie Hu , Yu Qin , Erchao Zhao , Xiaoxi Jiang , Guanjun Jiang

The pace of scientific research, vital for improving human life, is complex, slow, and needs specialized expertise. Meanwhile, novel, impactful research often stems from both a deep understanding of prior work, and a cross-pollination of…

Computation and Language · Computer Science 2025-02-11 Jinheon Baek , Sujay Kumar Jauhar , Silviu Cucerzan , Sung Ju Hwang

Large Language Models (LLMs) excel in traditional natural language processing tasks but struggle with problems that require complex domain-specific calculations or simulations. While equipping LLMs with external tools to build LLM-based…

Software Engineering · Computer Science 2025-06-11 Bohan Lyu , Xin Cong , Heyang Yu , Pan Yang , Yujia Qin , Yining Ye , Yaxi Lu , Zhong Zhang , Yukun Yan , Yankai Lin , Zhiyuan Liu , Maosong Sun

Cell type annotation is a critical yet laborious step in single-cell RNA sequencing analysis. We present a trustworthy large language model (LLM)-agent, CellTypeAgent, which integrates LLMs with verification from relevant databases.…

Genomics · Quantitative Biology 2025-05-15 Jiawen Chen , Jianghao Zhang , Huaxiu Yao , Yun Li

Driven by the rapid advancements of Large Language Models (LLMs), LLM-based agents have emerged as powerful intelligent systems capable of human-like cognition, reasoning, and interaction. These agents are increasingly being deployed across…

As Large Language Models (LLMs) are increasingly deployed in highly specialized vertical domains, the evaluation of their domain-specific performance becomes critical. However, existing evaluations for vertical domains typically rely on the…

Artificial Intelligence · Computer Science 2025-09-26 Wanying Wang , Zeyu Ma , Xuhong Wang , Yangchun Zhang , Pengfei Liu , Mingang Chen

Large language models (LLMs) have demonstrated impressive performance in understanding language and executing complex reasoning tasks. However, LLMs with long context windows have been notorious for their expensive training costs and high…

Computation and Language · Computer Science 2024-03-14 Jun Zhao , Can Zu , Hao Xu , Yi Lu , Wei He , Yiwen Ding , Tao Gui , Qi Zhang , Xuanjing Huang

Hallucinations remain a significant challenge in current Generative AI models, undermining trust in AI systems and their reliability. This study investigates how orchestrating multiple specialized Artificial Intelligent Agents can help…

Computation and Language · Computer Science 2025-01-27 Diego Gosmar , Deborah A. Dahl

Artificial Intelligence (AI), particularly Large Language Models (LLMs), is transforming scientific discovery, enabling rapid knowledge generation and hypothesis formulation. However, a critical challenge is hallucination, where LLMs…

Artificial Intelligence · Computer Science 2025-12-30 Bhanu Prakash Vangala , Sajid Mahmud , Pawan Neupane , Joel Selvaraj , Jianlin Cheng

Gene expression analysis holds the key to many biomedical discoveries, yet extracting insights from raw transcriptomic data remains formidable due to the complexity of multiple large, semi-structured files and the need for extensive domain…

Artificial Intelligence · Computer Science 2026-05-19 Haoyang Liu , Yijiang Li , Haohan Wang

We present a modular framework powered by large language models (LLMs) that automates and streamlines key tasks across the early-stage computational drug discovery pipeline. By combining LLM reasoning with domain-specific tools, the…

Large Language Models (LLMs) have substantially influenced various software engineering tasks. Indeed, in the case of software refactoring, traditional LLMs have shown the ability to reduce development time and enhance code quality.…

Software Engineering · Computer Science 2026-03-06 Khouloud Oueslati , Maxime Lamothe , Foutse Khomh

Large language models (LLMs) have shown growing promise in biomedical research, particularly for knowledge-driven interpretation tasks. However, their ability to reliably reason from gene-level knowledge to functional understanding, a core…

Genomics · Quantitative Biology 2026-05-25 Xiaohan Huang , Meng Xiao , Chuan Qin , Qingqing Long , Jinmiao Chen , Yuanchun Zhou , Hengshu Zhu

Can we leverage LLMs to model the process of discovering novel language model (LM) architectures? Inspired by real research, we propose a multi-agent LLM approach that simulates the conventional stages of research, from ideation and…

Artificial Intelligence · Computer Science 2025-06-26 Junyan Cheng , Peter Clark , Kyle Richardson

Hallucinations in large language models (LLMs) have recently become a significant problem. A recent effort in this direction is a shared task at Semeval 2024 Task 6, SHROOM, a Shared-task on Hallucinations and Related Observable…

Computation and Language · Computer Science 2024-04-12 Rahul Mehta , Andrew Hoblitzell , Jack O'Keefe , Hyeju Jang , Vasudeva Varma