Related papers: Minimizing the Minimizers via Alphabet Reordering
Given a sequence of $n$ numbers and $k$ parallel First-in-First-Out (FIFO) queues, how close can one bring the sequence to sorted order? It is known that $k$ queues suffice to sort the sequence if the Longest Decreasing Subsequence (LDS) of…
In the submodular ranking (SR) problem, the input consists of a set of submodular functions defined on a ground set of elements. The goal is to order elements for all the functions to have value above a certain threshold as soon on average…
We propose a new finding $k$-minima algorithm and prove that its query complexity is $\mathcal{O}(\sqrt{kN})$, where $N$ is the number of data indices. Though the complexity is equivalent to that of an existing method, the proposed is…
Let $s$ be West's deterministic stack-sorting map. A well-known result (West) is that any length $n$ permutation can be sorted with $n-1$ iterations of $s.$ In 2020, Defant introduced the notion of highly-sorted permutations -- permutations…
We propose novel algorithms for sequence prediction based on ideas from stringology. These algorithms are time and space efficient and satisfy mistake bounds related to particular stringological complexity measures of the sequence. In this…
Suppose an oracle knows a string $S$ that is unknown to us and that we want to determine. The oracle can answer queries of the form "Is $s$ a substring of $S$?". In 1995, Skiena and Sundaram showed that, in the worst case, any algorithm…
While a broad range of techniques have been proposed to tackle distribution shift, the simple baseline of training on an $\textit{undersampled}$ balanced dataset often achieves close to state-of-the-art-accuracy across several popular…
Given a set of $k$ strings $I$, their longest common subsequence (LCS) is the string with the maximum length that is a subset of all the strings in $I$. A data-structure for this problem preprocesses $I$ into a data-structure such that the…
Classical problems of sorting and searching assume an underlying linear ordering of the objects being compared. In this paper, we study a more general setting, in which some pairs of objects are incomparable. This generalization is relevant…
We study the use of sampling for efficiently mining the top-K frequent itemsets of cardinality at most w. To this purpose, we define an approximation to the top-K frequent itemsets to be a family of itemsets which includes (resp., excludes)…
We study the problem of ranking with submodular valuations. An instance of this problem consists of a ground set $[m]$, and a collection of $n$ monotone submodular set functions $f^1, \ldots, f^n$, where each $f^i: 2^{[m]} \to R_+$. An…
A primary challenge in metagenomics is reconstructing individual microbial genomes from the mixture of short fragments created by sequencing. Recent work leverages the sparsity of the assembly graph to find $r$-dominating sets which enable…
A finite deterministic (semi)automaton $\mathcal{A} =(Q,\Sigma,\delta)$ is $k$-compressible if there is some word $w\in \Sigma^+$ such that the image of its state set $Q$ under the natural action of $w$ is reduced by at least $k$ states.…
Motivated by applications in single-cell biology and metagenomics, we investigate the problem of matrix reordering based on a noisy disordered monotone Toeplitz matrix model. We establish the fundamental statistical limit for this problem…
For a sequence $S$ of terms from an abelian group $G$ of length $|S|$, let $\Sigma_n(S)$ denote the set of all elements that can be represented as the sum of terms in some $n$-term subsequence of $S$. When the subsum set is very small,…
We consider the unconstrained $L_2$-$L_p$ minimization: find a minimizer of $\|Ax-b\|^2_2+\lambda \|x\|^p_p$ for given $A \in R^{m\times n}$, $b\in R^m$ and parameters $\lambda>0$, $p\in [0,1)$. This problem has been studied extensively in…
Min-entropy sampling gives a bound on the min-entropy of a randomly chosen subset of a string, given a bound on the min-entropy of the whole string. K\"onig and Renner showed a min-entropy sampling theorem that holds relative to quantum…
A major challenge in next-generation genome sequencing (NGS) is to assemble massive overlapping short reads that are randomly sampled from DNA fragments. To complete assembling, one needs to finish a fundamental task in many leading…
As computer clusters are found to be highly effective for handling massive datasets, the design of efficient parallel algorithms for such a computing model is of great interest. We consider ({\alpha}, k)-minimal algorithms for such a…
Consider the fundamental problem of drawing a simple random sample of size k without replacement from [n] := {1, . . . , n}. Although a number of classical algorithms exist for this problem, we construct algorithms that are even simpler,…