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Drug discovery remains a formidable challenge: more than 90 percent of candidate molecules fail in clinical evaluation, and development costs often exceed one billion dollars per approved therapy. Disparate data streams, from genomics and…

Artificial Intelligence · Computer Science 2025-04-28 Kevin Song , Andrew Trotter , Jake Y. Chen

Machine-learning interatomic potentials (MLIPs) have greatly extended the reach of atomic-scale simulations, offering the accuracy of first-principles calculations at a fraction of the cost. Leveraging large quantum mechanical databases and…

The goal of video anomaly detection is tantamount to performing spatio-temporal localization of abnormal events in the video. The multiscale temporal dependencies, visual-semantic heterogeneity, and the scarcity of labeled data exhibited by…

Computer Vision and Pattern Recognition · Computer Science 2025-07-29 Dezhi An , Wenqiang Liu , Kefan Wang , Zening Chen , Jun Lu , Shengcai Zhang

An antibiogram is a periodic summary of antibiotic resistance results of organisms from infected patients to selected antimicrobial drugs. Antibiograms help clinicians to understand regional resistance rates and select appropriate…

Machine Learning · Computer Science 2023-05-04 Xingbo Fu , Chen Chen , Yushun Dong , Anil Vullikanti , Eili Klein , Gregory Madden , Jundong Li

The discovery of peptides having high biological activity is very challenging mainly because there is an enormous diversity of compounds and only a minority have the desired properties. To lower cost and reduce the time to obtain promising…

Quantitative Methods · Quantitative Biology 2014-04-11 Sébastien Giguère , François Laviolette , Mario Marchand , Denise Tremblay , Sylvain Moineau , Éric Biron , Jacques Corbeil

Comprehending extended audiovisual experiences remains challenging for computational systems, particularly temporal integration and cross-modal associations fundamental to human episodic memory. We introduce HippoMM, a computational…

Multimedia · Computer Science 2026-04-03 Yueqian Lin , Jingyang Zhang , Qinsi Wang , Hancheng Ye , Yuzhe Fu , Yudong Liu , Hai "Helen" Li , Yiran Chen

From self-assembly and protein folding to combinatorial metamaterials, a key challenge in material design is finding the right combination of interacting building blocks that yield targeted properties. Such structures are fiendishly…

Soft Condensed Matter · Physics 2025-06-26 Ryan van Mastrigt , Marjolein Dijkstra , Martin van Hecke , Corentin Coulais

Bayesian network models are finding success in characterizing enzyme-catalyzed reactions, slow conformational changes, predicting enzyme inhibition, and genomics. In this work, we apply them to statistical modeling of peptides by…

Applications · Statistics 2018-10-09 Rainier Barrett , Shaoyi Jiang , Andrew D White

Current inference systems for Mixture-of-Experts (MoE) models primarily employ static parallelization strategies. However, these static approaches cannot consistently achieve optimal performance across different inference scenarios, as they…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-28 Haoran Lin , Xianzhi Yu , Kang Zhao , Han Bao , Zongyuan Zhan , Ting Hu , Wulong Liu , Zekun Yin , Xin Li , Weiguo Liu

Results from multiple diagnostic tests are usually combined to improve the overall diagnostic accuracy. For binary classification, maximization of the empirical estimate of the area under the receiver operating characteristic (ROC) curve is…

Methodology · Statistics 2026-04-16 Raju Maiti , Jialiang Li , Priyam Das , Lei Feng , Derek Hausenloy , Bibhas Chakraborty

Speculative decoding enhances the inference efficiency of large language models (LLMs) by generating drafts using a small draft language model (DLM) and verifying them in batches with a large target language model (TLM). However, adaptive…

Hardware Architecture · Computer Science 2026-05-01 Ma Zirui , Fan Zhihua , Li Wenxing , Wu Haibin , Zhang Fulin , Ye Xiaochun , Li Wenming

Machine-learned interatomic potentials (MLIPs) promise to significantly advance atomistic simulations by delivering quantum-level accuracy for large molecular systems at a fraction of the computational cost of traditional electronic…

Mamba-based architectures have shown to be a promising new direction for deep learning models owing to their competitive performance and sub-quadratic deployment speed. However, current Mamba multi-modal large language models (MLLM) are…

Computer Vision and Pattern Recognition · Computer Science 2024-10-10 Yifei Xing , Xiangyuan Lan , Ruiping Wang , Dongmei Jiang , Wenjun Huang , Qingfang Zheng , Yaowei Wang

This work presents a new method for online selection of multiple penalty parameters for the alternating direction method of multipliers (ADMM) algorithm applied to optimization problems with multiple constraints or functionals with block…

Image and Video Processing · Electrical Eng. & Systems 2026-04-21 Luke Lozenski , Michael T. McCann , Brendt Wohlberg

Hybrid transaction/analytical processing (HTAP) is an emerging database paradigm that supports both online transaction processing (OLTP) and online analytical processing (OLAP) workloads. Computing-intensive OLTP operations, involving…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-05 Yilong Zhao , Mingyu Gao , Huanchen Zhang , Fangxin Liu , Gongye Chen , He Xian , Haibing Guan , Li Jiang

In this work, we study various hybrid models of entropy-based and representativeness sampling techniques in the context of active learning in medical segmentation, in particular examining the role of UMAP (Uniform Manifold Approximation and…

Computer Vision and Pattern Recognition · Computer Science 2024-05-28 H. S. Tan , Kuancheng Wang , Rafe Mcbeth

Alzheimer's disease progression prediction is critical for patients with early Mild Cognitive Impairment (MCI) to enable timely intervention and improve their quality of life. While existing progression prediction techniques demonstrate…

Computer Vision and Pattern Recognition · Computer Science 2025-11-18 Zhongying Deng , Shujun Wang , Angelica I Aviles-Rivero , Zoe Kourtzi , Carola-Bibiane Schönlieb

Today's scientific challenges, from climate modeling to Inertial Confinement Fusion design to novel material design, require exploring huge design spaces. In order to enable high-impact scientific discovery, we need to scale up our ability…

We explore different ways to simplify the evaluation of the smooth overlap of atomic positions (SOAP) many-body atomic descriptor [Bart\'{o}k et al., Phys. Rev. B 87, 184115 (2013)]. Our aim is to improve the computational efficiency of…

Computational Physics · Physics 2019-09-16 Miguel A. Caro

Machine Learning Interatomic Potentials (MLIP) are a novel in silico approach for molecular property prediction, creating an alternative to disrupt the accuracy/speed trade-off of empirical force fields and density functional theory (DFT).…