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Automated and accurate segmentation of individual vertebra in 3D CT and MRI images is essential for various clinical applications. Due to the limitations of current imaging techniques and the complexity of spinal structures, existing…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Jian Shi , Tianqi You , Pingping Zhang , Hongli Zhang , Rui Xu , Haojie Li

We propose an attention mechanism for 3D medical image segmentation. The method, named segmentation-by-detection, is a cascade of a detection module followed by a segmentation module. The detection module enables a region of interest to…

Computer Vision and Pattern Recognition · Computer Science 2017-11-02 Min Tang , Zichen Zhang , Dana Cobzas , Martin Jagersand , Jacob L. Jaremko

Instance segmentation in 3D images is a fundamental task in biomedical image analysis. While deep learning models often work well for 2D instance segmentation, 3D instance segmentation still faces critical challenges, such as insufficient…

Computer Vision and Pattern Recognition · Computer Science 2018-07-02 Zhuo Zhao , Lin Yang , Hao Zheng , Ian H. Guldner , Siyuan Zhang , Danny Z. Chen

Medical image segmentation is an important analysis task in clinical practice and research. Deep learning has massively advanced the field, but current approaches are mostly based on models trained for a specific task. Training such models…

Image and Video Processing · Electrical Eng. & Systems 2025-12-18 Anwai Archit , Luca Freckmann , Constantin Pape

Many strides have been made in semantic segmentation of multiple classes within an image. This has been largely due to advancements in deep learning and convolutional neural networks (CNNs). Features within a CNN are automatically learned…

Image and Video Processing · Electrical Eng. & Systems 2019-09-17 Erik Gaasedelen , Alex Deakyne , Paul Iaizzo

Automatic surgical scene segmentation is fundamental for facilitating cognitive intelligence in the modern operating theatre. Previous works rely on conventional aggregation modules (e.g., dilated convolution, convolutional LSTM), which…

Computer Vision and Pattern Recognition · Computer Science 2022-06-27 Yueming Jin , Yang Yu , Cheng Chen , Zixu Zhao , Pheng-Ann Heng , Danail Stoyanov

Machine Learning has considerably improved medical image analysis in the past years. Although data-driven approaches are intrinsically adaptive and thus, generic, they often do not perform the same way on data from different imaging…

Image and Video Processing · Electrical Eng. & Systems 2020-07-02 Marie Kloenne , Sebastian Niehaus , Leonie Lampe , Alberto Merola , Janis Reinelt , Ingo Roeder , Nico Scherf

Training deep neural networks on large and sparse datasets is still challenging and can require large amounts of computation and memory. In this work, we address the task of performing semantic segmentation on large volumetric data sets,…

Computer Vision and Pattern Recognition · Computer Science 2018-07-09 Lorenz Berger , Eoin Hyde , Matt Gibb , Nevil Pavithran , Garin Kelly , Faiz Mumtaz , Sébastien Ourselin

Classification and segmentation of 3D point clouds are important tasks in computer vision. Because of the irregular nature of point clouds, most of the existing methods convert point clouds into regular 3D voxel grids before they are used…

Computer Vision and Pattern Recognition · Computer Science 2018-12-05 Wei Zeng , Theo Gevers

Patch-based methods are widely used in 3D medical image segmentation to address memory constraints in processing high-resolution volumetric data. However, these approaches often neglect the patch's location within the global volume, which…

Computer Vision and Pattern Recognition · Computer Science 2026-01-22 Donnate Hooft , Stefan M. Fischer , Cosmin Bercea , Jan C. Peeken , Julia A. Schnabel

Understanding 3D medical image volumes is critical in the medical field, yet existing 3D medical convolution and transformer-based self-supervised learning (SSL) methods often lack deep semantic comprehension. Recent advancements in…

Computer Vision and Pattern Recognition · Computer Science 2025-09-12 Qiuhui Chen , Xuancheng Yao , Huping Ye , Yi Hong

Deep convolutional neural networks (CNNs) have shown excellent performance in object recognition tasks and dense classification problems such as semantic segmentation. However, training deep neural networks on large and sparse datasets is…

Computer Vision and Pattern Recognition · Computer Science 2017-12-25 Lorenz Berger , Eoin Hyde , M. Jorge Cardoso , Sebastien Ourselin

Semantic understanding of scenes in three-dimensional space (3D) is a quintessential part of robotics oriented applications such as autonomous driving as it provides geometric cues such as size, orientation and true distance of separation…

Computer Vision and Pattern Recognition · Computer Science 2019-11-01 Kartik Srivastava , Akash Kumar Singh , Guruprasad M. Hegde

Surgical context inference has recently garnered significant attention in robot-assisted surgery as it can facilitate workflow analysis, skill assessment, and error detection. However, runtime context inference is challenging since it…

Computer Vision and Pattern Recognition · Computer Science 2023-08-25 Zongyu Li , Ian Reyes , Homa Alemzadeh

Skull stripping is usually the first step for most brain analysisprocess in magnetic resonance images. A lot of deep learn-ing neural network based methods have been developed toachieve higher accuracy. Since the 3D deep learning…

Image and Video Processing · Electrical Eng. & Systems 2019-10-25 Zhen Liu , Borui Xiao , Yuemeng Li , Yong Fan

Many recent medical segmentation systems rely on powerful deep learning models to solve highly specific tasks. To maximize performance, it is standard practice to evaluate numerous pipelines with varying model topologies, optimization…

Machine Learning · Computer Science 2019-11-06 Mathias Perslev , Erik Bjørnager Dam , Akshay Pai , Christian Igel

Recently, machine learning-based semantic segmentation algorithms have demonstrated their potential to accurately segment regions and contours in medical images, allowing the precise location of anatomical structures and abnormalities.…

Computer Vision and Pattern Recognition · Computer Science 2024-03-26 Yifei Wang , Chuhong Zhu

Automated segmentation of the vertebral column in Computed Tomography (CT) scans is a prerequisite for pathological assessment and surgical planning. However, state-of-the-art methods, particularly those based on Transformers or large-scale…

Computer Vision and Pattern Recognition · Computer Science 2026-05-21 K S Nithurshen , Saurabh J. Shigwan

Deep convolutional neural networks have driven substantial advancements in the automatic understanding of images. Requiring a large collection of images and their associated annotations is one of the main bottlenecks limiting the adoption…

Computer Vision and Pattern Recognition · Computer Science 2019-08-22 Zahra Mirikharaji , Yiqi Yan , Ghassan Hamarneh

Deep learning techniques for 3D brain vessel image segmentation have not been as successful as in the segmentation of other organs and tissues. This can be explained by two factors. First, deep learning techniques tend to show poor…

Computer Vision and Pattern Recognition · Computer Science 2021-11-04 Vien Ngoc Dang , Francesco Galati , Rosa Cortese , Giuseppe Di Giacomo , Viola Marconetto , Prateek Mathur , Karim Lekadir , Marco Lorenzi , Ferran Prados , Maria A. Zuluaga