Related papers: Revisiting the Second Vassiliev (In)variant for Po…
Using a modified foam evaluation, we give a categorification of the Alexander polynomial of a knot. We also give a purely algebraic version of this knot homology which makes it appear as the infinite page of a spectral sequence starting at…
We present a new reduced-order computational method for the molecular dynamics simulation of entangled polymer systems. The polymer chains are modeled as continuous Gaussian chains. Our algorithm is based on the application of the molecular…
A singular knot is an immersed circle in $\mathbb R^{3}$ with finitely many transverse double points. The study of singular knots was initially motivated by the study of Vassiliev invariants. Namely, singular knots give rise to a decreasing…
The most tight conformations of prime knots are found with the use of the SONO algorithm. Their curvature and torsion profiles are calculated. Symmetry of the knots is analysed. Connections with the physics of polymers are discussed.
We give two different, statistically consistent definitions of the length l of a prime knot tied into a polymer ring. In the good solvent regime the polymer is modelled by a self avoiding polygon of N steps on cubic lattice and l is the…
One construction of the Alexander polynomial is as a quantum invariant associated with representations of restricted quantum $\mathfrak{sl}_2$ at a fourth root of unity. We generalize this construction to define a link invariant…
We study the dynamics of a knot in a semiflexible polymer confined to a narrow channel of width comparable to the polymers' persistence length. Using a combination of Brownian dynamics simulations and a coarse-grained stochastic model, we…
Given any oriented link diagram, one can construct knot invariants using skein relations. Usually such a skein relation contains three or four terms. In this paper, the author introduces several new ways to smooth a crossings, and uses a…
The leading coefficient of the Alexander polynomial of a knot is the most informative element in this invariant, and the growth of orders of the first homology of cyclic branched covering spaces is also a familiar subject. Accordingly,…
We define three different types of spanning surfaces for knots in thickened surfaces. We use these to introduce new Seifert matrices, Alexander-type polynomials, genera, and a signature invariant. One of these Alexander polynomials extends…
We introduce a new invariant of tangles along with an algebraic framework in which to understand it. We claim that the invariant contains the classical Alexander polynomial of knots and its multivariable extension to links. We argue that of…
The Reidemeister torsion construction can be applied to the chain complex used to compute the Khovanov homology of a knot or a link. This defines a volume form on Khovanov homology. The volume form transforms correctly under Reidemeister…
Updated rerefences and introduction. Given a knot in an integer homology sphere, one can construct a family of closed 3-manifolds (parametrized by the positive integers), namely the cyclic branched coverings of the knot. In this paper we…
Knots and links represent a fundamental motif of non-local connectivity that permeates the physical sciences from string theory to protein folds. While spectral braiding has been explored in two-band non-Hermitian models across various…
Many experiments have been done to determine the relative strength of different knots, and these show that the break in a knotted rope almost invariably occurs at a point just outside the `entrance' to the knot. The influence of knots on…
A classical knot is described by a one-stroke trajectory with entanglements of a string. The replica method appears as a powerful tool in statistical mechanics for a polymer or self-avoiding walk. We consider this replica N to 0 limit in…
Virtual knot theory is a generalization of knot theory which is based on Gauss chord diagrams and link diagrams on closed oriented surfaces. A twisted knot is a generalization of a virtual knot, which corresponds to a link diagram on a…
The derived group of a permutation representation, introduced by R.H. Crowell, unites many notions of knot theory. We survey Crowell's construction, and offer new applications. The twisted Alexander group of a knot is defined. Using it, we…
Quantum phases can be classified by topological invariants, which take on discrete values capturing global information about the quantum state. Over the past decades, these invariants have come to play a central role in describing matter,…
We introduce a two-dimensional lattice model for the description of knotted polymer rings. A polymer configuration is modeled by a closed polygon drawn on the square diagonal lattice, with possible crossings describing pairs of strands of…