Related papers: Revisiting the Second Vassiliev (In)variant for Po…
It was shown by Goussarov that Vassiliev invariants are polynomials in the gleams for a fixed Turaev shadow. In this paper we show that Vassiliev invariants are almost characterized by this fact. We also prove that the space of knot…
The Langevin Equation for cooperative dynamics represents the dynamics of polymer melts with chains of increasing degree of polymerization, covering the full range of behavior from the unentangled to the entangled regime. This equation…
The folding transition of biopolymers from the coil to compact structures has attracted wide research interest in the past and is well studied in polymer physics. Recent seminal works on DNA in confined devices have shown that these long…
Building on the approach of Bar-Natan and Van der Veen to universal knot invariants using (perturbed) Gaussian functions, we develop a Gaussian model to compute the Alexander polynomial $\Delta_{\mathcal{K}}(T)$ of an oriented knot…
In this paper, we define some polynomial invariants for virtual knots and links. In the first part we use Manturov's parity axioms to obtain a new polynomial invariant of virtual knots. This invariant can be regarded as a generalization of…
Alexander polynomial arises in the leading term of a semi-classical Melvin-Morton-Rozansky expansion of colored knot polynomials. In this work, following the opposite direction, we propose how to reconstruct colored HOMFLY-PT polynomials,…
Kauffman knot polynomial invariants are discovered in classical abelian Chern-Simons field theory. A topological invariant $t^{I\left( \mathcal{L} \right) }$ is constructed for a link $\mathcal{L}$, where $I$ is the abelian Chern-Simons…
We present a computer simulation study of the compact self-avoiding loops as regards their length and topological state. We use a Hamiltonian closed path on the cubic-shaped segment of a 3D cubic lattice as a model of a compact polymer. The…
Virtual knot theory is a generalization (discovered by the author in 1996) of knot theory to the study of all oriented Gauss codes. (Classical knot theory is a study of planar Gauss codes.) Graph theory studies non-planar graphs via…
This paper contains the first knot polynomials which can distinguish the orientations of classical knots and which make no excplicit use of the knot group. But they make extensive use of the meridian and of the longitude in a geometric way.…
Polymer rings in solution are either permanently entangled or not. Permanent topological restrictions give rise to additional entropic interactions apart from the ones arising due to mere chain flexibility or excluded volume. Conversely,…
We prove a refinement of Vogel's statement that the Vassiliev invariants of knots coming from semisimple Lie algebras do not generate all Vassiliev invariants. This refinement takes into account the second grading on Vassiliev invariants…
The non-linear stress-strain relation for crosslinked polymer networks is studied using molecular dynamics simulations. Previously we demonstrated the importance of trapped entanglements in determining the elastic and relaxational…
We extend knot contact homology to a theory over the ring $\mathbb{Z}[\lambda^{\pm 1},\mu^{\pm 1}]$, with the invariant given topologically and combinatorially. The improved invariant, which is defined for framed knots in $S^3$ and can be…
We discuss the entropy of a circular polymer under a topological constraint. We call it the {\it topological entropy} of the polymer, in short. A ring polymer does not change its topology (knot type) under any thermal fluctuations. Through…
Semiflexible polymer models are widely used as a paradigm to understand structural phases in biomolecules including folding of proteins. Since stable knots are not so common in real proteins, the existence of stable knots in semiflexible…
Given a homomorphism from a knot group to a fixed group, we introduce an element of a $K_1$-group, which is a generalization of (twisted) Alexander polynomials. We compare this $K_1$-class with other Alexander polynomials. In terms of…
The A-polynomial is a knot invariant related to the space of $SL_2(\mathbb{C})$ representations of the knot group. In this paper our interests lies in the logarithmic Gauss map of the A-polynomial. We develop a homological point of view on…
In recent times some interesting field theoretical descriptions of the statistical mechanics of entangling polymers have been proposed by various authors. In these approaches, a single test polymer fluctuating in a background of static…
This paper visualizes a knot reduction algorithm