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Graph neural networks are widely used in machine learning applied to chemistry, and in particular for material science discovery. For crystalline materials, however, generating graph-based representation from geometrical information for…

Materials Science · Physics 2023-07-12 Astrid Klipfel , Yaël Frégier , Adlane Sayede , Zied Bouraoui

The task of deducing three-dimensional molecular configurations from their two-dimensional graph representations holds paramount importance in the fields of computational chemistry and pharmaceutical development. The rapid advancement of…

Biomolecules · Quantitative Biology 2025-01-09 Bobin Yang , Jie Deng , Zhenghan Chen , Ruoxue Wu

Generative graph models struggle to scale due to the need to predict the existence or type of edges between all node pairs. To address the resulting quadratic complexity, existing scalable models often impose restrictive assumptions such as…

Machine Learning · Computer Science 2024-05-24 Yiming Qin , Clement Vignac , Pascal Frossard

In this research, we developed a graph-based framework to represent various aspects of optimal thermal management system design, with the aim of rapidly and efficiently identifying optimal design candidates. Initially, the graph-based…

Systems and Control · Electrical Eng. & Systems 2023-11-28 Saeid Bayat , Nastaran Shahmansouri , Satya RT Peddada , Alex Tessier , Adrian Butscher , James T Allison

Generating large-scale, physically consistent AC Optimal Power Flow (ACOPF) datasets is essential for modern data-driven power system applications. The central challenge lies in balancing solution accuracy with computational efficiency.…

Systems and Control · Electrical Eng. & Systems 2026-02-04 Shashank Shekhar , Abhinav Karn , Kris Keshav , Shivam Bansal , Parikshit Pareek

The highly granular calorimeter prototypes of the CALICE collaboration have provided large data samples with precise three-dimensional information on hadronic showers with steel and tungsten absorbers and silicon, scintillator and gas…

Instrumentation and Detectors · Physics 2019-08-13 Naomi van der Kolk

We present multiscale graph-based reduction algorithms for upscaling heterogeneous and anisotropic diffusion problems. The proposed coarsening approaches begin by constructing a partitioning of the computational domain into a set of…

Numerical Analysis · Mathematics 2025-10-14 Maria Vasilyeva , James Brannick , Ben S. Southworth

The high-luminosity upgrade of the LHC will come with unprecedented physics and computing challenges. One of these challenges is the accurate reconstruction of particles in events with up to 200 simultaneous proton-proton interactions. The…

Instrumentation and Detectors · Physics 2021-06-04 Shah Rukh Qasim , Kenneth Long , Jan Kieseler , Maurizio Pierini , Raheel Nawaz

Diffusion models, a family of generative models based on deep learning, have become increasingly prominent in cutting-edge machine learning research. With a distinguished performance in generating samples that resemble the observed data,…

Machine Learning · Computer Science 2023-05-02 Lequan Lin , Zhengkun Li , Ruikun Li , Xuliang Li , Junbin Gao

Diffusion models achieve state-of-the-art performance in generating realistic objects and have been successfully applied to images, text, and videos. Recent work has shown that diffusion can also be defined on graphs, including graph…

Machine Learning · Computer Science 2023-02-09 Alex M. Tseng , Nathaniel Diamant , Tommaso Biancalani , Gabriele Scalia

The research of innovative methods aimed at reducing costs and shortening the time needed for simulation, going beyond conventional approaches based on Monte Carlo methods, has been sparked by the development of collision simulations at the…

Machine Learning · Computer Science 2024-05-24 Karol Rogoziński , Jan Dubiński , Przemysław Rokita , Kamil Deja

We propose a novel denoising diffusion generative model for predicting nonlinear fluid fields named FluidDiff. By performing a diffusion process, the model is able to learn a complex representation of the high-dimensional dynamic system,…

Machine Learning · Computer Science 2023-01-31 Gefan Yang , Stefan Sommer

Autoregressive models excel in efficiency and plug directly into the transformer ecosystem, delivering robust generalization, predictable scalability, and seamless workflows such as fine-tuning and parallelized training. However, they…

Machine Learning · Computer Science 2025-06-13 Samuel Belkadi , Steve Hong , Marian Chen , Miruna Cretu , Charles Harris , Pietro Lio

Diffusion-based models demonstrate impressive generation capabilities. However, they also have a massive number of parameters, resulting in enormous model sizes, thus making them unsuitable for deployment on resource-constraint devices.…

Computer Vision and Pattern Recognition · Computer Science 2024-09-04 Avideep Mukherjee , Soumya Banerjee , Piyush Rai , Vinay P. Namboodiri

Inverse molecular design with diffusion models holds great potential for advancements in material and drug discovery. Despite success in unconditional molecular generation, integrating multiple properties such as synthetic score and gas…

Machine Learning · Computer Science 2024-10-04 Gang Liu , Jiaxin Xu , Tengfei Luo , Meng Jiang

We describe an algorithm which has been developed to extract fine granularity information from an electromagnetic calorimeter with strip-based readout. Such a calorimeter, based on scintillator strips, is being developed to apply particle…

Instrumentation and Detectors · Physics 2015-06-09 Katsushige Kotera , Daniel Jeans , Akiya Miyamoto , Tohru Takeshita

In particle physics, homogeneous calorimeters are used to measure the energy of particles as they interact with the detector material. Although not as precise as trackers or muon detectors, these calorimeters provide valuable insights into…

In this paper, we study the graph classification problem in vertex-labeled graphs. Our main goal is to classify the graphs comparing their higher-order structures thanks to heat diffusion on their simplices. We first represent…

Social and Information Networks · Computer Science 2020-07-02 Mehmet Emin Aktas , Esra Akbas

Probabilistic denoising diffusion models (DDMs) have set a new standard for 2D image generation. Extending DDMs for 3D content creation is an active field of research. Here, we propose TetraDiffusion, a diffusion model that operates on a…

Computer Vision and Pattern Recognition · Computer Science 2024-08-12 Nikolai Kalischek , Torben Peters , Jan D. Wegner , Konrad Schindler

We provide an overview of the diffusion model as a method to generate new samples. Generative models have been recently adopted for tasks such as art generation (Stable Diffusion, Dall-E) and text generation (ChatGPT). Diffusion models in…

Machine Learning · Statistics 2025-06-13 Justin Le