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Related papers: Progress and Opportunities of Foundation Models in…

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The rapid advancement of foundation models in medical imaging represents a significant leap toward enhancing diagnostic accuracy and personalized treatment. However, the deployment of foundation models in healthcare necessitates a rigorous…

Computer Vision and Pattern Recognition · Computer Science 2024-10-08 Congzhen Shi , Ryan Rezai , Jiaxi Yang , Qi Dou , Xiaoxiao Li

Advances in foundation modeling have reshaped computational pathology. However, the increasing number of available models and lack of standardized benchmarks make it increasingly complex to assess their strengths, limitations, and potential…

Computer Vision and Pattern Recognition · Computer Science 2025-02-11 Andrew Zhang , Guillaume Jaume , Anurag Vaidya , Tong Ding , Faisal Mahmood

Integrating Foundation Models (FMs) into recommendation systems is an emerging and promising research direction. However, centralized paradigms face growing pressure from privacy concerns and strict regulatory requirements. Federated…

Machine Learning · Computer Science 2026-05-08 Zhiwei Li , Guodong Long , Chunxu Zhang , Honglei Zhang , Jing Jiang , Chengqi Zhang

Large foundation models (FMs) are transforming Earth science by integrating heterogeneous multimodal data, such as multi-platform imagery, gridded reanalysis data, diverse geophysical and geochemical observations, and domain-specific text,…

Instrumentation and Methods for Astrophysics · Physics 2026-05-14 Xiangyu Zhao , Bo Liu , Yuehan Zhang , Zelin Song , Wanghan Xu , Feng Liu , Fengxiang Wang , Ben Fei , Fenghua Ling , Wangxu Wei , Wenlong Zhang , Xiao-Ming Wu

The search for meaningful structure in biological data has relied on cutting-edge advances in computational technology and data science methods. However, challenges arise as we push the limits of scale and complexity in biological problems.…

Foundation models (FMs) are a popular topic of research in AI. Their ability to generalize to new tasks and datasets without retraining or needing an abundance of data makes them an appealing candidate for applications on specialist…

Computer Vision and Pattern Recognition · Computer Science 2024-09-06 Marga Don , Stijn Pinson , Blanca Guillen Cebrian , Yuki M. Asano

Large language models (LLMs) are a class of artificial intelligence models based on deep learning, which have great performance in various tasks, especially in natural language processing (NLP). Large language models typically consist of…

Quantitative Methods · Quantitative Biology 2025-02-04 Jiajia Liu , Mengyuan Yang , Yankai Yu , Haixia Xu , Tiangang Wang , Kang Li , Xiaobo Zhou

The integration of artificial intelligence (AI) in medical diagnostics represents a significant advancement in managing upper gastrointestinal (GI) cancer, a major cause of global cancer mortality. Specifically for gastric cancer (GC),…

Many of the current scientific advances in the life sciences have their origin in the intensive use of data for knowledge discovery. In no area this is so clear as in bioinformatics, led by technological breakthroughs in data acquisition…

Machine Learning · Computer Science 2018-02-28 Davide Bacciu , Paulo J. G. Lisboa , José D. Martín , Ruxandra Stoean , Alfredo Vellido

Search-based software engineering (SBSE), which integrates metaheuristic search techniques with software engineering, has been an active area of research for about 25 years. It has been applied to solve numerous problems across the entire…

Software Engineering · Computer Science 2026-05-07 Hassan Sartaj , Shaukat Ali , Paolo Arcaini , Andrea Arcuri

Pathology Foundation Models (FMs) hold great promise for healthcare. Before they can be used in clinical practice, it is essential to ensure they are robust to variations between medical centers. We measure whether pathology FMs focus on…

Machine Learning · Computer Science 2025-02-04 Edwin D. de Jong , Eric Marcus , Jonas Teuwen

With the wide adoption of functional magnetic resonance imaging (fMRI) by cognitive neuroscience researchers, large volumes of brain imaging data have been accumulated in recent years. Aggregating these data to derive scientific insights…

Applications · Statistics 2020-06-01 Ming Bo Cai , Michael Shvartsman , Anqi Wu , Hejia Zhang , Xia Zhu

Foundation models, large-scale, pre-trained deep-learning models adapted to a wide range of downstream tasks have gained significant interest lately in various deep-learning problems undergoing a paradigm shift with the rise of these…

Computer Vision and Pattern Recognition · Computer Science 2023-10-31 Bobby Azad , Reza Azad , Sania Eskandari , Afshin Bozorgpour , Amirhossein Kazerouni , Islem Rekik , Dorit Merhof

Context: With artificial intelligence (AI) being well established within the daily lives of research communities, we turn our gaze toward formal methods (FM). FM aim to provide sound and verifiable reasoning about problems in computer…

Logic in Computer Science · Computer Science 2025-08-29 Sebastian Stock , Jannik Dunkelau , Atif Mashkoor

The complexity of human biology and its intricate systems holds immense potential for advancing human health, disease treatment, and scientific discovery. However, traditional manual methods for studying biological interactions are often…

Other Quantitative Biology · Quantitative Biology 2025-01-24 Himanshu Buckchash , Gyanendra Kumar Verma , Dilip K. Prasad

Recent advancements in machine learning (ML) and deep learning (DL), particularly through the introduction of Foundation Models (FMs), have significantly enhanced surgical scene understanding within minimally invasive surgery (MIS). This…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Ufaq Khan , Umair Nawaz , Adnan Qayyum , Shazad Ashraf , Yutong Xie , Muhammad Haris Khan , Muhammad Bilal , Junaid Qadir

The introduction of large language models has significantly expanded global demand for computing; addressing this growing demand requires novel approaches that introduce new capabilities while addressing extant needs. Although inspiration…

Neural and Evolutionary Computing · Computer Science 2026-02-04 Wilkie Olin-Ammentorp

The advent of foundation models (FMs) such as large language models (LLMs) has led to a cultural shift in data science, both in medicine and beyond. This shift involves moving away from specialized predictive models trained for specific,…

Machine Learning · Computer Science 2024-09-18 Ahmed Alaa , Bin Yu

Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. This survey provides a systematic review of recent advancements, focusing on genomic sequence modeling,…

Computation and Language · Computer Science 2026-03-03 Zhenyu Wang , Zikang Wang , Jiyue Jiang , Pengan Chen , Xiangyu Shi , Yu Li

Despite the wealth of single-cell multi-omics data, it remains challenging to predict the consequences of novel genetic and chemical perturbations in the human body. It requires knowledge of molecular interactions at all biological levels,…

Artificial Intelligence · Computer Science 2025-01-22 You Wu , Lei Xie