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Planktonic active matter represents an emergent system spanning different scales: individual, population and community; and complexity arising from sub-cellular and cellular to collective and ecosystem scale dynamics. This cross-scale…

Biological Physics · Physics 2023-01-24 Anupam Sengupta

Drying of biologically-relevant sessile droplets, including passive systems (like DNA and proteins), as well as active microbial systems comprising bacteria and algae, have garnered considerable attention over the last decades. Distinct…

Soft Condensed Matter · Physics 2023-11-07 Anusuya Pal , Amalesh Gope , Anupam Sengupta

The Stratum Corneum (SC), the outermost layer of skin, comprises rigid corneocytes (keratin filled dead cells) in a specialized lipid matrix. The continuous lipid matrix provides the main barrier against uncontrolled water loss and invasion…

Soft Condensed Matter · Physics 2016-09-28 Chinmay Das , Peter D. Olmsted

Localised structures in dissipative appears in various fields of natural science such as biology, chemistry, plant ecology, optics and laser physics. The proposed theme issue is to gather specialists from various fields of non-linear…

Pattern Formation and Solitons · Physics 2015-06-22 M. Tlidi , K. Staliunas , K. Panajotov , A. G. Vladimirov , M. G. Clerc

The control properties of discrete-time switched linear systems (SLS) with switching signals generated by logical dynamic systems are studied using the semi-tensor product (STP) approach. With the algebraic state space representation…

Systems and Control · Electrical Eng. & Systems 2024-01-08 Xiao Zhang , Min Meng , Zhengping Ji

Vesicle Traffic Systems (VTSs) are the material transport mechanisms among the compartments inside the biological cells. The compartments are viewed as nodes that are labeled with the containing chemicals and the transport channels are…

Subcellular Processes · Quantitative Biology 2018-10-12 Ashutosh Gupta , Somya Mani , Ankit Shukla

Plants create sugar in the mesophyll cells of their leaves by photosynthesis. This sugar, mostly sucrose, has to be loaded via the bundle sheath into the phloem vascular system (the sieve elements), where it is distributed to growing parts…

Biological Physics · Physics 2014-10-14 Julia Dölger , Hanna Rademaker , Johannes Liesche , Alexander Schulz , Tomas Bohr

Single-particle tracking (SPT) has become a popular tool to study the intracellular transport of molecules in living cells. Inferring the character of their dynamics is important, because it determines the organization and functions of the…

Quantitative Methods · Quantitative Biology 2020-09-09 Joanna Janczura , Patrycja Kowalek , Hanna Loch-Olszewska , Janusz Szwabiński , Aleksander Weron

For a set of mulitple sequences, their patterns,Longest Common Subsequences (LCS) and Shortest Common Supersequences (SCS) represent different aspects of these sequences profile, and they can all be used for biological sequence comparisons…

Data Structures and Algorithms · Computer Science 2016-11-17 Kang Ning , Hoong Kee Ng , Hon Wai Leong

Thermal leptogenesis, that can be viewed as a consequence of the seesaw model, is a very natural mechanism to explain the matter anti-matter asymmetry of the Universe. Recently, lepton flavours have been included in the Boltzmann equations,…

High Energy Physics - Phenomenology · Physics 2007-10-11 F. X. Josse-Michaux

The Dynamic Template model of biological cell membranes and the cytoplasm as spatially organised fluid layers is extended to plant cells, and is shown to offer a feasible shear driven mechanism for the co-alignment of internal and external…

General Physics · Physics 2008-07-15 J. T. Lofthouse

The Species Sensitivity Distribution (SSD) is a key tool to assess the ecotoxicological threat of contaminant to biodiversity. It predicts safe concentrations for a contaminant in a community. Widely used, this approach suffers from several…

Sucrose esters (SEs), derived from sucrose and fatty acids, are biodegradable and non-toxic surfactants increasingly favored as substitutes for petrochemically-synthesized ones in food, cosmetics, and pharmaceuticals. SEs provide versatile…

Soft Condensed Matter · Physics 2025-05-12 Diana Cholakova , Slavka Tcholakova

Atherosclerosis is a major cardiovascular complication of diseases associated with elevated oxidative stress such as type 2 diabetes and metabolic syndrome. In these situations, low density lipoproteins (LDL) undergo oxidation. Oxidized LDL…

Biomolecules · Quantitative Biology 2024-09-25 Celine Luquain-Costaz , Isabelle Delton

The evidence that Flowering Locus T (FT) protein and its paralog Twin Sister of FT, act as the long distance floral stimulus, or at least that they are part of it in diverse plant species, has attracted much attention in recent years.…

Biomolecules · Quantitative Biology 2012-10-25 I. G. Matsoukas , A. J. Massiah , B. Thomas

The galactose network is a complex system responsible for galactose metabolism. It has been extensively studied experimentally and mathematically at the unicellular level to broaden our understanding of its regulatory mechanisms at higher…

Molecular Networks · Quantitative Biology 2016-02-12 Tina M. Mitre , Anmar Khadra , Michael C. Mackey

Language models for biological and chemical sequences enable crucial applications such as drug discovery, protein engineering, and precision medicine. Currently, these language models are predominantly based on Transformer architectures.…

Experiments have revealed that membrane proteins can form two-dimensional clusters with regular translational and orientational protein arrangements, which may allow cells to modulate protein function. However, the physical mechanisms…

Biomolecules · Quantitative Biology 2016-11-04 Osman Kahraman , Peter D. Koch , William S. Klug , Christoph A. Haselwandter

For two subsets S and T of a given lattice L, we define a relative distributive (modular) property over L, that underlies a large family including the usual class of distributive (modular) lattices. Our proposed class will be called…

Combinatorics · Mathematics 2023-12-07 M. R. Emamy-K. , Gustavo A. Melendez Rios

Improving the detailed understanding of the underlying properties and functions of biomolecules has recently attracted growing interest, enabled by the possibility of real-space imaging of single, intact macromolecules using Scanning…

Mesoscale and Nanoscale Physics · Physics 2026-03-10 Tim J. Seifert , Dhaneesh Kumar , Markus Etzkorn , Stephan Rauschenbach , Klaus Kern , Kelvin Anggara , Uta Schlickum