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Phononic engineering at gigahertz (GHz) frequencies form the foundation of microwave acoustic filters, acousto-optic modulators, and quantum transducers. Terahertz (THz) phononic engineering could lead to acoustic filters and modulators at…

Understanding how transcription factors (TFs) regulate mammalian gene expression in space and time is a central topic in biology. To activate a gene, a TF has first to diffuse in the available space of the nucleus until it reaches a target…

Subcellular Processes · Quantitative Biology 2018-11-19 Maxime Woringer , Xavier Darzacq

Terahertz (THz) communication is considered one of the most critical technologies for 6G because of its abundant bandwidth. To compensate the high propagation of THz, analog/digital hybrid precoding for THz massive multiple input multiple…

Signal Processing · Electrical Eng. & Systems 2025-07-15 Yang Wang , Chuang Yang , Mugen Peng

Using analytical calculations and computer simulations we consider both the lateral diffusion of a membrane protein and the fluctuation spectrum of the membrane in which the protein is embedded. The membrane protein interacts with the…

Soft Condensed Matter · Physics 2015-05-18 Ellen Reister-Gottfried , Stefan M. Leitenberger , Udo Seifert

Although terahertz (THz) communications can provide mobile broadband services, it usually has a large path loss and is vulnerable to antenna misalignment. This significantly degrades the reception reliability. To address this issue, the…

Information Theory · Computer Science 2022-09-29 Ziyang Song , Zheng Shi , Qingping Dou , Guanghua Yang , Yunfei Li , Shaodan Ma

The Integration Host Factor (IHF) is a nucleoid-associated protein critical for both DNA compaction and biofilm stability. While its role in DNA packaging within the cell is well understood, its structural role in scaffolding biofilms is…

Protein-DNA interactions are critical for the successful functioning of all natural systems. The key role in these interactions is played by processes of protein search for specific sites on DNA. Although it has been studied for many years,…

Subcellular Processes · Quantitative Biology 2018-08-08 Alexey A. Shvets , Maria P. Kochugaeva , Anatoly B. Kolomeisky

Using high-resolution, two-dimensional particle-in-cell simulations, we investigate numerically the mechanisms of terahertz (THz) emissions in submicron-thick carbon solid foils driven by ultraintense ($\sim 10^{20}\,\rm W\,cm^{-2}$),…

Plasma Physics · Physics 2020-07-10 J. Déchard , X. Davoine , L. Gremillet , L. Bergé

We explore the consequences of very high dimensionality in the dynamical landscape of protein folding. Consideration of both typical range of stabilising interactions, and folding rates themselves, leads to a model of the energy…

Biological Physics · Physics 2007-05-23 T. C. B. McLeish

The capacity to resist attacks from the environment is crucial to the survival of all organisms. We quantitatively analyze the susceptibility of protein interaction networks of numerous organisms to random and malicious attacks. We find for…

Computational Physics · Physics 2010-10-19 Christian M. Schneider , Roberto F. S. Andrade , Troy Shinbrot , Hans J. Herrmann

TeraHertz (THz) communications are envisioned as a promising technology, owing to its unprecedented multi-GHz bandwidth. In this paper, wideband channel measurement campaigns at 140 GHz and 220 GHz are conducted in indoor scenarios…

Information Theory · Computer Science 2021-04-02 Jia He , Yi Chen , Yiqin Wang , Ziming Yu , Chong Han

As an example of topic where biology and physics meet, we present the issue of protein folding and stability, and the development of thermodynamics-based bioinformatics tools that predict the stability and thermal resistance of proteins and…

Biomolecules · Quantitative Biology 2016-03-15 Fabrizio Pucci , Marianne Rooman

To achieve ubiquitous connectivity in next-generation networks through aerospace communications while maintaining high data rates, Terahertz (THz) band communications (0.1-10 THz) with large continuous bandwidths are considered a promising…

Signal Processing · Electrical Eng. & Systems 2025-02-26 Weijun Gao , Chong Han , Zhi Chen , Yong Chen , Yuanzhi He , Wenjun Zhang

Many aspects of the study of protein folding and dynamics have been affected by the recent advances in machine learning. Methods for the prediction of protein structures from their sequences are now heavily based on machine learning tools.…

Biological Physics · Physics 2019-11-25 Frank Noé , Gianni De Fabritiis , Cecilia Clementi

Advanced nanophotonics penetrates into other areas of science and technology, ranging from applied physics to biology and resulting in many fascinating cross-disciplinary applications. It has been recently demonstrated that suitably…

Developing accurate and efficient coarse-grained representations of proteins is crucial for understanding their folding, function, and interactions over extended timescales. Our methodology involves simulating proteins with molecular…

Biomolecules · Quantitative Biology 2023-10-11 Carles Navarro , Maciej Majewski , Gianni de Fabritiis

Terahertz (THz) sciences and technologies have contributed to a rapid development of a wide range of applications and expanded the frontiers in fundamental science. Spintronic terahertz emitters offer conceptual advantages since the spin…

The interplay of membrane proteins is vital for many biological processes, such as cellular transport, cell division, and signal transduction between nerve cells. Theoretical considerations have led to the idea that the membrane itself…

Soft Condensed Matter · Physics 2016-11-28 Casper van der Wel , Afshin Vahid , Anđela Šarić , Timon Idema , Doris Heinrich , Daniela J. Kraft

Microscopic understanding of low-frequency molecular motions in liquids has been a longstanding goal in soft-matter science. So far, such low-frequency motions have mostly been accessed indirectly by off-resonant optical pulses. A more…

Soft Condensed Matter · Physics 2017-04-26 Mohsen Sajadi , Martin Wolf , Tobias Kampfrath

The effect of the photoinduced absorption of terahertz (THz) radiation in a semi-insulating GaAs crystal is studied by the pulsed THz transmission spectroscopy. We found that a broad-band modulation of THz radiation may be induced by a…

Applied Physics · Physics 2017-08-24 A. S. Kurdyubov , A. V. Trifonov , I. Ya. Gerlovin , I. V. Ignatiev , A. V. Kavokin