Related papers: Enumerating combinatorial resultant decompositions…
How does one determine if a collection of bars joined by freely rotating hinges cannot be deformed without changing the length of any of the bars? In other words, how does one determine if a bar-joint graph is rigid? This question has been…
In a finite undirected simple graph, a {\it chordless cycle} is an induced subgraph which is a cycle. We propose two algorithms to enumerate all chordless cycles of such a graph. Compared to other similar algorithms, the proposed algorithms…
We consider the (exact, minimum) $k$-cut problem: given a graph and an integer $k$, delete a minimum-weight set of edges so that the remaining graph has at least $k$ connected components. This problem is a natural generalization of the…
In the context of reconstructing phylogenetic networks from a collection of phylogenetic trees, several characterisations and subsequently algorithms have been established to reconstruct a phylogenetic network that collectively embeds all…
We consider three variants of the problem of finding a maximum weight restricted $2$-matching in a subcubic graph $G$. (A $2$-matching is any subset of the edges such that each vertex is incident to at most two of its edges.) Depending on…
Knots are commonly represented and manipulated via diagrams, which are decorated planar graphs. When such a knot diagram has low treewidth, parameterized graph algorithms can be leveraged to ensure the fast computation of many invariants…
In this paper we consider the problem of computing the $2$-vertex-connected components ($2$-vccs) of directed graphs. We present two new algorithms for solving this problem. The first algorithm runs in $O(mn^{2})$ time, the second in…
A graph $G$ is {\em matching-decyclable} if it has a matching $M$ such that $G-M$ is acyclic. Deciding whether $G$ is matching-decyclable is an NP-complete problem even if $G$ is 2-connected, planar, and subcubic. In this work we present…
We generalize the problem of reconstructing strings from their substring compositions first introduced by Acharya et al. in 2015 motivated by polymer-based advanced data storage systems utilizing mass spectrometry. Namely, we see strings as…
The intersection graph of a collection of trapezoids with corner points lying on two parallel lines is called a trapezoid graph. Using binary indexed tree data structure, we improve algorithms for calculating the size and the number of…
Graphs or networks are a very convenient way to represent data with lots of interaction. Recently, Machine Learning on Graph data has gained a lot of traction. In particular, vertex classification and missing edge detection have very…
Entanglement is a complexity measure of digraphs that origins in fixed-point logics. Its combinatorial purpose is to measure the nested depth of cycles in digraphs. We address the problem of characterizing the structure of graphs of…
We describe the structure of triconnected graph with the help of its decomposition by 3-cutsets. We divide all 3-cutsets of a triconnected graph into rather small groups with a simple structure, named complexes. The detailed description of…
Let $G$ be a strongly connected directed graph. We consider the following three problems, where we wish to compute the smallest strongly connected spanning subgraph of $G$ that maintains respectively: the $2$-edge-connected blocks of $G$…
Let $G=(V,E)$ be a strongly connected graph with $|V|\geq 3$. For $T\subseteq V$, the strongly connected graph $G$ is $2$-T-connected if $G$ is $2$-edge-connected and for each vertex $w$ in $T$, $w$ is not a strong articulation point. This…
The congested clique model of distributed computing has been receiving attention as a model for densely connected distributed systems. While there has been significant progress on the side of upper bounds, we have very little in terms of…
We consider a natural combinatorial optimization problem on chordal graphs, the class of graphs with no induced cycle of length four or more. A subset of vertices of a chordal graph is (monophonically) convex if it contains the vertices of…
We present an $O(\log d + \log\log_{m/n} n)$-time randomized PRAM algorithm for computing the connected components of an $n$-vertex, $m$-edge undirected graph with maximum component diameter $d$. The algorithm runs on an ARBITRARY CRCW…
We propose a novel generalization of Independent Set Reconfiguration (ISR): Connected Components Reconfiguration (CCR). In CCR, we are given a graph $G$, two vertex subsets $A$ and $B$, and a multiset $\mathcal{M}$ of positive integers. The…
We define an algorithm k which takes a connected graph G on a totally ordered vertex set and returns an increasing tree R (which is not necessarily a subtree of G). We characterize the set of graphs G such that k(G)=R. Because this set has…