Related papers: Classification of normal phylogenetic varieties fo…

We prove that the multiplication of sections of globally generated line bundles on a model wonderful variety M of simply connected type is always surjective. This follows by a general argument which works for every wonderful variety and…

For a triangulated category T, if C is a cluster-tilting subcategory of T, then the quotient category T\C is an abelian category. Under certain conditions, the converse also holds. This is an very important result of cluster-tilting theory,…

We prove two results about the natural representation of a group G of automorphisms of a normal projective threefold X on its second cohomology. We show that if X is minimal then G, modulo a normal subgroup of null entropy, is embedded as a…

It has remained an open question for some time whether, given a set of not necessarily binary (i.e. "nonbinary") trees T on a set of taxa X, it is possible to determine in time f(r).poly(m) whether there exists a phylogenetic network that…

Let $X/\mathbb{F}_{q}$ be a smooth geometrically connected variety. Inspired by work of Corlette-Simpson over $\mathbb{C}$, we formulate a conjecture that absolutely irreducible rank 2 local systems with infinite monodromy on $X$ come from…

We classify, up to isomorphism and up to equivalence, involutions on graded-division finite-dimensional simple real (associative) algebras, when the grading group is abelian.

Let X be a geometrically rational (or more generally, separably rationally connected) variety over a finite field K. We prove that if K is large enough then X contains many rational curves defined over K. As a consequence we prove that…

Let $X$ be a normal projective variety of dimension $n$ and $G$ an abelian group of automorphisms such that all elements of $G\setminus \{\mathrm{id}\}$ are of positive entropy. Dinh and Sibony showed that $G$ is actually free abelian of…

An evolutionary tree (phylogenetic tree) is a binary, rooted, unordered tree that models the evolutionary history of currently living species in which leaves are labeled by species. In this paper, we investigate the problem of finding the…

Phylogenetic networks are a special type of graph which generalize phylogenetic trees and that are used to model non-treelike evolutionary processes such as recombination and hybridization. In this paper, we consider {\em unrooted}…

A phylogenetic tree is a tree with a fixed set of leaves that has no vertices of degree two. In this paper, we axiomatically define four other discrete structures on the set of leaves. We prove that each of these structures is an equivalent…

We prove asymptotic normality for the number of fringe subtrees isomorphic to any given tree in uniformly random trees with given vertex degrees. As applications, we also prove corresponding results for random labelled trees with given…

We consider the following basic problem in phylogenetic tree construction. Let $\mathcal{P} = \{T_1, \ldots, T_k\}$ be a collection of rooted phylogenetic trees over various subsets of a set of species. The tree compatibility problem asks…

We revisit the representation theory in type $A$used previously to establish that the dissimilarity vectors of phylogenetic trees are points on the tropical Grassmannian variety. We use a different version of this construction to show that…

Consider an order $n$ abelian group $G$ and a tree $T$ on $n$ vertices. When is it possible to (bijectively) label $V(T)$ by $G$ so that along all edges $xy$ of $T$, the sums $x+y$ are distinct? This problem can be traced back to the work…

In phylogenetics, tree-based networks are used to model and visualize the evolutionary history of species where reticulate events such as horizontal gene transfer have occurred. Formally, a tree-based network $N$ consists of a phylogenetic…

The total coordinate ring TC(X) of a normal variety is a generalization of the ring introduced and studied by Cox in connection with a toric variety. Consider a normal projective variety X with divisor class group Cl(X), and let us assume…

Let $X$ be a smooth proper variety over an algebraically closed field of characteristic zero, and let $\mathcal{A} \subset D^{b}_{\mathrm{coh}}(X)$ be an admissible subcategory. Let $Z \subset X$ be the union of set-theoretical supports of…

In a previous work, we gave a metric on the class of semibinary tree-sibling time consistent phylogenetic networks that is computable in polynomial time; in particular, the problem of deciding if two networks of this kind are isomorphic is…

We present a class of abelian groups that exhibit a high degree of freeness while possessing no non-trivial homomorphisms to a canonical free object. Unlike prior investigations, which primarily focused on torsion-free groups, our work…