Related papers: Classification of normal phylogenetic varieties fo…

Phylogenetic networks generalize phylogenetic trees by allowing the modelization of events of reticulate evolution. Among the different kinds of phylogenetic networks that have been proposed in the literature, the subclass of binary…

For any split totally degenerate abelian variety over a complete discrete valuation field, we construct a log abelian variety over the discrete valuation ring extending the given abelian variety. This generalizes the log Tate curve of Kato.

The branching structure of biological evolution confers statistical dependencies on phenotypic trait values in related organisms. For this reason, comparative macroevolutionary studies usually begin with an inferred phylogeny that describes…

Consider a smooth connected algebraic group $G$ acting on a normal projective variety $X$ with an open dense orbit. We show that Aut($X$) is a linear algebraic group if so is $G$; for an arbitrary $G$, the group of components of Aut($X$) is…

We prove some results on effective very ampleness and projective normality for some varieties with trivial canonical bundle. In the first part we prove an effective projective normality result for an ample line bundle on regular smooth…

In phylogenetics, phylogenetic trees are rooted binary trees, whereas phylogenetic networks are rooted arbitrary acyclic digraphs. Edges are directed away from the root and leaves are uniquely labeled with taxa in phylogenetic networks. For…

The search for similarity and dissimilarity measures on phylogenetic trees has been motivated by the computation of consensus trees, the search by similarity in phylogenetic databases, and the assessment of clustering results in…

The most commonly known triangulated categories arise from chain complexes in an abelian category by passing to chain homotopy classes or inverting quasi-isomorphisms. Such examples are called `algebraic' because they originate from abelian…

Attempting to recognize a tree inside a phylogenetic network is a fundamental undertaking in evolutionary analysis. In the last few years, therefore, tree-based phylogenetic networks, which are defined by a spanning tree called a…

Let $X$ be a smooth complex projective algebraic variety. Let $\mathcal{G}$ be a $G$-banded gerbe with $G$ a finite abelian group. We prove an exact formula expressing genus $g$ orbifold Gromov-Witten invariants of $\mathcal{G}$ in terms of…

We introduce and study the category of twisted modules over a triangular differential graded bocs. We show that in this category idempotents split, that it admits a natural structure of a Frobenius category, that a twisted module is…

Phylogenetic networks are a generalization of phylogenetic trees that are used in biology to represent reticulate or non-treelike evolution. Recently, several algorithms have been developed which aim to construct phylogenetic networks from…

Phylogenetic tree shapes capture fundamental signatures of evolution. We consider ``ranked'' tree shapes, which are equipped with a total order on the internal nodes compatible with the tree graph. Recent work has established an elegant…

Phylogenetic trees represent certain species and their likely ancestors. In such a tree, present-day species are leaves and an edge from u to v indicates that u is an ancestor of v. Weights on these edges indicate the phylogenetic distance.…

We prove that a smooth proper universally CH_0-trivial variety X over a field k has universally trivial Brauer group. This fills a gap in the literature concerning the p-torsion of the Brauer group when k has characteristic p.

We consider the distribution of p-power group schemes among the torsion of abelian varieties over finite fields of characteristic p, as follows. Fix natural numbers g and n, and let $\xi$ be a non-supersingular principally quasipolarized…

Let $k$ be an algebraically closed field of characteristic $p>0$. We give a birational characterization of ordinary abelian varieties over $k$: a smooth projective variety $X$ is birational to an ordinary abelian variety if and only if…

As shown by Happel, from any Frobenius exact category, we can construct a triangulated category as a stable category. On the other hand, it was shown by Iyama and Yoshino that if a pair of subcategories $\mathcal{D}\subseteq\mathcal{Z}$ in…

For every regular cardinal $\alpha$, we construct a cofibrantly generated Quillen model structure on a category whose objects are essentially DG categories which are stable under suspensions, cosuspensions, cones and $\alpha$-small sums.…

We study the problem of classifying triangulated categories with finite-dimensional morphism spaces and finitely many indecomposables over an algebraically closed field. We obtain a new proof of the following result due to Xiao and Zhu: the…