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We review a recent trend in computational systems biology which aims at using pattern recognition algorithms to infer the structure of large-scale biological networks from heterogeneous genomic data. We present several strategies that have…

Quantitative Methods · Quantitative Biology 2008-09-22 Jean-Philippe Vert

The "folding algorithm"\cite{fold1} is a matrix product state algorithm for simulating quantum systems that involves a spatial evolution of a matrix product state. Hence, the computational effort of this algorithm is controlled by the…

Quantum Physics · Physics 2015-03-18 M. B. Hastings , R. Mahajan

Automated scheduling is potentially a very useful tool for facilitating efficient, intuitive interactions between a robot and a human teammate. However, a current gapin automated scheduling is that it is not well understood how to best…

Robotics · Computer Science 2020-10-13 Maya Abo Dominguez , William La , James C. Boerkoel

Offline runtime verification involves the static analysis of executions of a system against a specification. For distributed systems, it is generally not possible to characterize executions in the form of global traces, given the absence of…

Software Engineering · Computer Science 2024-03-06 Erwan Mahe , Boutheina Bannour , Christophe Gaston , Arnault Lapitre , Pascale Le Gall

Graph deep learning methods have become popular tools to process collections of correlated time series. Unlike traditional multivariate forecasting methods, graph-based predictors leverage pairwise relationships by conditioning forecasts on…

Machine Learning · Computer Science 2025-06-09 Andrea Cini , Ivan Marisca , Daniele Zambon , Cesare Alippi

Sewing patterns, the essential blueprints for fabric cutting and tailoring, act as a crucial bridge between design concepts and producible garments. However, existing uni-modal sewing pattern generation models struggle to effectively encode…

Graphics · Computer Science 2025-04-10 Feng Zhou , Ruiyang Liu , Chen Liu , Gaofeng He , Yong-Lu Li , Xiaogang Jin , Huamin Wang

Network-structured data becomes ubiquitous in daily life and is growing at a rapid pace. It presents great challenges to feature engineering due to the high non-linearity and sparsity of the data. The local and global structure of the…

Machine Learning · Computer Science 2025-01-31 Xin Sun , Zenghui Song , Yongbo Yu , Junyu Dong , Claudia Plant , Christian Boehm

An active line of research has used on-line data to study the ways in which discrete units of information---including messages, photos, product recommendations, group invitations---spread through social networks. There is relatively little…

Social and Information Networks · Computer Science 2017-04-10 Rahmtin Rotabi , Cristian Danescu-Niculescu-Mizil , Jon Kleinberg

This paper aims to develop a mathematical foundation to model knitting with graphs. We provide a precise definition for knit objects with a knot theoretic component and propose a simple undirected graph, a simple directed graph, and a…

Data Structures and Algorithms · Computer Science 2024-07-04 Kathryn Gray , Brian Bell , Diana Sieper , Stephen Kobourov , Falk Schreiber , Karsten Klein , Seokhee Hong

Pairwise temporal interactions between entities can be represented as temporal networks, which code the propagation of processes such as epidemic spreading or information cascades, evolving on top of them. The largest outcome of these…

Social and Information Networks · Computer Science 2023-07-12 Rémi Vaudaine , Pierre Borgnat , Paulo Goncalves , Rémi Gribonval , Márton Karsai

We investigate the capabilities of neural inverse procedural modeling to infer high-quality procedural yarn models with fiber-level details from single images of depicted yarn samples. While directly inferring all parameters of the…

Computer Vision and Pattern Recognition · Computer Science 2023-03-02 Elena Trunz , Jonathan Klein , Jan Müller , Lukas Bode , Ralf Sarlette , Michael Weinmann , Reinhard Klein

Experiential AI is proposed as a new research agenda in which artists and scientists come together to dispel the mystery of algorithms and make their mechanisms vividly apparent. It addresses the challenge of finding novel ways of opening…

Computers and Society · Computer Science 2019-08-08 Drew Hemment , Ruth Aylett , Vaishak Belle , Dave Murray-Rust , Ewa Luger , Jane Hillston , Michael Rovatsos , Frank Broz

Pattern images are everywhere in the digital and physical worlds, and tools to edit them are valuable. But editing pattern images is tricky: desired edits are often programmatic: structure-aware edits that alter the underlying program which…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 Aditya Ganeshan , Thibault Groueix , Paul Guerrero , Radomír Měch , Matthew Fisher , Daniel Ritchie

We present ReTracing, a multi-agent embodied performance art that adopts an archaeological approach to examine how artificial intelligence shapes, constrains, and produces bodily movement. Drawing from science-fiction novels, the project…

Computer Vision and Pattern Recognition · Computer Science 2026-02-13 Yitong Wang , Yue Yao

The real world is awash with multi-agent problems that require collective action by self-interested agents, from the routing of packets across a computer network to the management of irrigation systems. Such systems have local incentives…

Multiagent Systems · Computer Science 2021-02-16 Michiel A. Bakker , Richard Everett , Laura Weidinger , Iason Gabriel , William S. Isaac , Joel Z. Leibo , Edward Hughes

We propose a general framework to extract microscopic interactions from raw configurations with deep neural networks. The approach replaces the modeling Hamiltonian by the neural networks, in which the interaction is encoded. It can be…

Computational Physics · Physics 2020-08-19 Lingxiao Wang , Yin Jiang , Kai Zhou

In this paper, we present a review of the recent work in deep learning methods for user interface design. The survey encompasses well known deep learning techniques (deep neural networks, convolutional neural networks, recurrent neural…

Human-Computer Interaction · Computer Science 2023-03-24 Subtain Malik , Muhammad Tariq Saeed , Marya Jabeen Zia , Shahzad Rasool , Liaquat Ali Khan , Mian Ilyas Ahmed

Identification of textile properties is an important milestone toward advanced robotic manipulation tasks that consider interaction with clothing items such as assisted dressing, laundry folding, automated sewing, textile recycling and…

Robotics · Computer Science 2021-03-18 Alberta Longhini , Michael C. Welle , Ioanna Mitsioni , Danica Kragic

Network embedding is an effective method to learn low-dimensional representations of nodes, which can be applied to various real-life applications such as visualization, node classification, and link prediction. Although significant…

Machine Learning · Computer Science 2020-03-31 Shixun Huang , Zhifeng Bao , Guoliang Li , Yanghao Zhou , J. Shane Culpepper

Realistic reconstruction of 3D clothing from an image has wide applications, such as avatar creation and virtual try-on. This paper presents a novel framework that reconstructs the texture map for 3D garments from a single image with pose.…

Graphics · Computer Science 2023-10-27 Hyun-Song Kwon , Sung-Hee Lee
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