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It is often presumed, that life evolves relatively fast on planets with clement conditions, at least in its basic forms, and that extended periods of habitability are subsequently needed for the evolution of higher life forms. Many planets…

Earth and Planetary Astrophysics · Physics 2017-11-23 Claudius Gros

The rapid advancement of artificial intelligence (AI) has demonstrated substantial potential in chemical engineering, yet existing AI systems remain limited in interdisciplinary collaboration and exploration of uncharted problems. To…

Artificial Intelligence · Computer Science 2025-10-03 Zekun Jiang , Chunming Xu , Tianhang Zhou

In many tissues, cell type varies over single-cell length-scales, creating detailed spatial heterogeneities fundamental to physiological function. To gain understanding of this relationship between tissue function and detailed structure,…

Computer simulations have become a very powerful tool for scientific research. Given the vast complexity that comes with many open scientific questions, a purely analytical or experimental approach is often not viable. For example,…

Neural and Evolutionary Computing · Computer Science 2016-07-12 Roman Bauer , Lukas Breitwieser , Alberto Di Meglio , Leonard Johard , Marcus Kaiser , Marco Manca , Manuel Mazzara , Max Talanov

Cellular life requires the presence of a set of biochemical mechanisms in order to maintain a predictable process of growth and division. Several attempts have been made towards the building of minimal protocells from a top-down approach,…

Cell Behavior · Quantitative Biology 2007-05-23 Javier Macia , Ricard V. Sole

Simulated nucleotide sequences are widely used in theoretical and empirical molecular evolution studies. Conventional simulators generally use fixed parameter time-homogeneous Markov model for sequence evolution. In this work, we use the…

Populations and Evolution · Quantitative Biology 2009-12-14 Sheng Guo , Li-San Wang , Junhyong Kim

Reversible Cellular Automata (RCA) are a particular kind of shift-invariant transformations characterized by a dynamics composed only of disjoint cycles. They have many applications in the simulation of physical systems, cryptography and…

Neural and Evolutionary Computing · Computer Science 2021-05-26 Luca Mariot , Stjepan Picek , Domagoj Jakobovic , Alberto Leporati

All cognitive agents are composite beings. Specifically, complex living agents consist of cells, which are themselves competent sub-agents navigating physiological and metabolic spaces. Behavior science, evolutionary developmental biology,…

Populations and Evolution · Quantitative Biology 2022-11-17 Leo Pio-Lopez , Johanna Bischof , Jennifer V. LaPalme , Michael Levin

This study focuses on an extended model of a standard cellular automaton (CA) that includes an extra index consisting of a radius that defines a perception area for each cell in addition to the radius defined by the CA rule. Extended…

Computational Complexity · Computer Science 2015-12-22 Yoshihiko Kayama

We present a novel form of Liquid Automata, using this to simulate autopoiesis, whereby living machines self-organise in the physical realm. This simulation is based on an earlier Cellular Automaton described by Francisco Varela. The basis…

Cellular Automata and Lattice Gases · Physics 2024-01-17 Steve Battle

Autonomous Driving Systems (ADSs) rely on Deep Neural Networks, allowing vehicles to navigate complex, open environments. However, the unpredictability of these scenarios highlights the need for rigorous system-level testing to ensure…

Software Engineering · Computer Science 2025-05-23 Hossein Yousefizadeh , Shenghui Gu , Lionel C. Briand , Ali Nasr

We present a probabilistic 3D generative model, named Generative Cellular Automata, which is able to produce diverse and high quality shapes. We formulate the shape generation process as sampling from the transition kernel of a Markov…

Computer Vision and Pattern Recognition · Computer Science 2021-03-09 Dongsu Zhang , Changwoon Choi , Jeonghwan Kim , Young Min Kim

Cellular automata (CA) are a class of computational models that exhibit rich dynamics emerging from the local interaction of cells arranged in a regular lattice. In this work we focus on a generalised version of typical CA, called graph…

Machine Learning · Computer Science 2021-10-28 Daniele Grattarola , Lorenzo Livi , Cesare Alippi

Recent work with Lenia, a continuously-valued cellular automata (CA) framework, has yielded $\sim$100s of compelling, bioreminiscent and mobile patterns. Lenia can be viewed as a continuously-valued generalization of the Game of Life, a…

Cellular Automata and Lattice Gases · Physics 2022-05-24 Q. Tyrell Davis , Josh Bongard

Coarse-Grained Reconfigurable Arrays (CGRAs) hold great promise as power-efficient edge accelerator, offering versatility beyond AI applications. Morpher, an open-source, architecture-adaptive CGRA design framework, is specifically designed…

Hardware Architecture · Computer Science 2023-09-13 Dhananjaya Wijerathne , Zhaoying Li , Tulika Mitra

Several cellular automata (CA) models have been developed to simulate self-organization of multiple levels of structures. However, they do not obey microscopic reversibility and conservation laws. In this paper, we describe the construction…

Cellular Automata and Lattice Gases · Physics 2015-05-13 Takayuki Nozawa , Toshiyuki Kondo

Deep learning techniques have recently demonstrated broad success in predicting complex dynamical systems ranging from turbulence to human speech, motivating broader questions about how neural networks encode and represent dynamical rules.…

Cellular Automata and Lattice Gases · Physics 2020-01-20 William Gilpin

Neuronal morphology is essential for studying brain functioning and understanding neurodegenerative disorders. As acquiring real-world morphology data is expensive, computational approaches for morphology generation have been studied.…

Neurons and Cognition · Quantitative Biology 2024-05-29 Nianzu Yang , Kaipeng Zeng , Haotian Lu , Yexin Wu , Zexin Yuan , Danni Chen , Shengdian Jiang , Jiaxiang Wu , Yimin Wang , Junchi Yan

Cellular automata (CA) is an important modelling paradigm for complex systems. In the design of cellular automata, the most difficult task is to find the transformation rules that describe the temporal evolution or pattern of a modelled…

Cellular Automata and Lattice Gases · Physics 2023-10-03 Lei Kou , Fangfang Zhang , Luobing Chen , Wende Ke , Quande Yuan , Junhe Wan , Zhen Wang

Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, because the numerous formats and methods for simulating various…

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