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Neuroevolution (NE) has recently proven a competitive alternative to learning by gradient descent in reinforcement learning tasks. However, the majority of NE methods and associated simulation environments differ crucially from biological…

Neural and Evolutionary Computing · Computer Science 2023-08-07 Gautier Hamon , Eleni Nisioti , Clément Moulin-Frier

Simulated evolution of biological networks can be used to generate functional networks as well as investigate hypotheses regarding natural evolution. A handful of studies have shown how simulated evolution can be used for studying the…

Quantitative Methods · Quantitative Biology 2010-05-17 Deepak Chandran , Herbert M. Sauro

The bottom-up construction of synthetic cells is one of the most intriguing and interesting research arenas in synthetic biology. Synthetic cells are built by encapsulating biomolecules inside lipid vesicles (liposomes), allowing the…

Computational Engineering, Finance, and Science · Computer Science 2013-10-01 Giordano Rampioni , Luisa Damiano , Marco Messina , Francesca D'Angelo , Livia Leoni , Pasquale Stano

Cellular automata and other discrete dynamical systems have long been studied as models of emergent complexity. Recently, neural cellular automata have been proposed as models to investigate the emerge of a more general artificial…

Cellular Automata and Lattice Gases · Physics 2025-07-28 Sanyam Jain , Stefano Nichele

Cellular automata (CA) are simulation models that can produce complex emergent behaviors from simple local rules. Although state-of-the-art GPU solutions are already fast due to their data-parallel nature, their performance can rapidly…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-26 Cristóbal A. Navarro , Felipe A. Quezada , Enzo Meneses , Héctor Ferrada , Nancy Hitschfeld

The discovery of complex multicellular organism development took millions of years of evolution. The genome of such a multicellular organism guides the development of its body from a single cell, including its control system. Our goal is to…

Robotics · Computer Science 2022-08-22 Sidney Pontes-Filho , Kathryn Walker , Elias Najarro , Stefano Nichele , Sebastian Risi

Agent-based simulation platforms play a key role in enabling fast-to-run evolution experiments that can be precisely controlled and observed in detail. Availability of high-resolution snapshots of lineage ancestries from digital…

Neural and Evolutionary Computing · Computer Science 2025-08-22 Vivaan Singhvi , Joey Wagner , Emily Dolson , Luis Zaman , Matthew Andres Moreno

Cellular automata are arrays of finite state machines that can exist in a finite number of states. These machines update their states simultaneously based on specific local rules that govern their interactions. This framework provides a…

Cellular Automata and Lattice Gases · Physics 2025-08-11 Genaro J. Martinez , Andrew Adamatzky , Guanrong Chen

A cellular automaton is a deterministic and exactly computable dynamical system which mimics certain fundamental aspects of physical dynamics such as spatial locality and finite entropy. CA systems can be constructed which have additional…

comp-gas · Physics 2007-05-23 Norman Margolus

Cellular automata are computers, similar to Turing machines. The main difference is that Turing machines use a one-dimensional tape, whereas cellular automata use a two-dimensional grid. The best-known cellular automaton is the Game of…

Cellular Automata and Lattice Gases · Physics 2025-01-10 Peter Turney

This study explores the emergence of life through a simulation model approach. The model "Multi-set chemical lattice model" is a model that allows virtual molecules of multiple types to be placed in each lattice cell on a two-dimensional…

Other Quantitative Biology · Quantitative Biology 2023-04-12 Takeshi Ishida

A minimalistic model for chimera states is presented. The model is a cellular automaton (CA) which depends on only one adjustable parameter, the range of the nonlocal coupling, and is built from elementary cellular automata and the majority…

Pattern Formation and Solitons · Physics 2016-05-25 Vladimir García-Morales

In this paper we propose an approach for measuring growth of complexity of emerging patterns in complex systems such as cellular automata. We discuss several ways how a metric for measuring the complexity growth can be defined. This…

Cellular Automata and Lattice Gases · Physics 2022-07-22 Hugo Cisneros , Josef Sivic , Tomas Mikolov

Employing an effective cellular automata model, we investigate and analyze the build-up and erosion of soil. Depending on the strategy employed for handling agricultural production, in many cases we find a critical dependence on the…

Cellular Automata and Lattice Gases · Physics 2015-06-16 Klaus Lichtenegger , Wilhelm Schappacher

Cellular automata are discrete and computational models thatcan be shown as general models of complexity. They are used in varied applications to derive the generalized behavior of the presented model. In this paper we have took one such…

Neural and Evolutionary Computing · Computer Science 2020-05-14 Karan Nayak

Cellular Automata (CA) are a class of discrete dynamical systems that have been widely used to model complex systems in which the dynamics is specified at local cell-scale. Classically, CA are run on a regular lattice and with perfect…

Cellular Automata and Lattice Gases · Physics 2007-05-23 Nazim A. Fates , Michel Morvan

In the article a transition from pattern evolution equation of reaction-diffusion type to a cellular automaton (CA) is described. The applicability of CA is demonstrated by generating patterns of complex irregular structure on a hexagonal…

Graphics · Computer Science 2018-07-09 Lovrenc Švegl , Igor Grabec

Scientific discovery relies on scientists generating novel hypotheses that undergo rigorous experimental validation. To augment this process, we introduce an AI co-scientist, a multi-agent system built on Gemini 2.0. The AI co-scientist is…

Understanding soil is fundamental to agriculture, carbon cycling, and environmental sustainability, yet progress is limited by fragmented and heterogeneous datasets that constrain modeling to small-scale predictive settings rather than…

Machine Learning · Computer Science 2026-05-11 Kuangdai Leng , Simon Jeffery , Panos Panagos , Tarje Nissen-Meyer

Bio-inspired algorithms utilize natural processes such as evolution, swarm behavior, foraging, and plant growth to solve complex, nonlinear, high-dimensional optimization problems. However, a plethora of these algorithms require a more…