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Nucleic acids are negatively charged macromolecules and their structure properties are strongly coupled to metal ions in solutions. In this paper, the salt effects on the flexibility of single stranded (ss) nucleic acid chain ranging from…

Biological Physics · Physics 2015-03-13 Feng-Hua Wang , Yuan-Yan Wu , Zhi-Jie Tan

Motivated by the very low diffusivity recently found in ab initio simulations of liquid water, we have studied its dependence with temperature, system size, and duration of the simulations. We use ab initio molecular dynamics (AIMD),…

Soft Condensed Matter · Physics 2009-11-10 M. V. Fernandez-Serra , Emilio Artacho

The work is devoted to the investigation of properties of water vapor. The main attention is focused on the physical nature of its effective polarizability and heat capacity at constant volume. We show that the specific temperature…

Soft Condensed Matter · Physics 2017-08-09 Viktor N. Makhlaichuk , Nikolay P. Malomuzh

Recent molecular simulation and integral equation results alkali-halide ion pair potentials-of-mean-force in water are discussed. Dielectric model calculations are implemented to check that these models produce that characteristic structure…

chem-ph · Physics 2008-02-03 Lawrence R. Pratt , Gerhard Hummer , Angel E. Garcia

Electrohydrodynamic flows of weak electrolytes at the nanoscale are significantly influenced by the molecular structure of water-like polar solvents within the electric double layer (EDL). Moreover, unlike in microfluidics, at these length…

Fluid Dynamics · Physics 2026-03-16 Pramodt Srinivasula

In this work we investigated the question of how the molecular nature of the dielectric media and the polymer-solvent dielectric mismatch affect the collapse of a polyelectrolyte chain in solution by means of dissipative particle dynamics…

Soft Condensed Matter · Physics 2021-12-15 Yulia D. Gordievskaya , Elena Yu. Kramarenko , Alexey A. Gavrilov

Understanding the mechanisms of proton energy deposition in matter and subsequent damage formation is fundamental to radiation science. Here we exploit the picosecond (10^-12 s) resolution of laser-driven accelerators to track ultra-fast…

We present a molecular-dynamics study of the solvent reorganization energy of electron transfer in supercooled water. We observe a sharp decrease of the reorganization energy at a temperature identified as the temperature of structural…

Soft Condensed Matter · Physics 2007-05-23 Pradip K. Ghorai , Dmitry V. Matyushov

Mean-field theory and scaling arguments are presented to model polyelectrolyte adsorption from semi-dilute solutions onto charged surfaces. Using numerical solutions of the mean-field equations, we show that adsorption exists only for…

Soft Condensed Matter · Physics 2009-11-10 A. Shafir , D. Andelman , R. R. Netz

The rate of micelle solubilization (SR) can be appraised following the decrease of the radius of a macroscopic drop of oil in contact with a surfactant solution [Todorov, 2002]. Alternatively, the time required for the dissolution of a…

Soft Condensed Matter · Physics 2020-10-30 Jose Daniel Rodriguez , Maurice Espinoza , Kareem Rahn-Chique , German Urbina-Villalba

Capacitive deionization (CDI) is a technology in which water is desalinated by ion electrosorption into the electric double layers (EDLs) of charging porous electrodes. In recent years significant advances have been made in modeling the…

Chemical Physics · Physics 2017-02-01 Amit N. Shocron , Matthew E. Suss

The fast flow rate of water through nanochannels has promising applications in desalination, energy conversion, and nanomedicine. We have used molecular dynamics simulations to show that the water molecules passing through a wide…

Soft Condensed Matter · Physics 2021-09-28 Hemant Kumar , Saheb Bera , Subhadeep Dasgupta , A. K. Sood , Chandan Dasgupta , Prabal K. Maiti

For binary solvent mixtures composed of ions and two kinds of polar solvents, electric double layer near a charged object is strongly affected by not only the binary solvent composition but also nature of solvents such as volume and dipole…

Soft Condensed Matter · Physics 2022-02-11 Jun-Sik Sin , Chung-Sik Sin

Using a theory of polarizable fluids, we extend a variational treatment of an excess electron to the many-electron case corresponding to finite metal concentrations in metal-ammonia solutions (MAS). We evaluate dielectric, optical, and…

Statistical Mechanics · Physics 2009-11-13 Gennady N. Chuev , Pascal Quemerais , Jason Crain

With gradual temperature increase in premelting regions of solid phase of methanol and high pressure phase of ethanol, and using novel procedure of separation of electrode polarization effects, we are able to register the contribution of…

Materials Science · Physics 2022-05-11 M. V. Kondrin , A. A. Pronin , Y. B. Lebed , V. V. Brazhkin

Intracellular positive ions neutralise negative charges on the phosphates of a DNA strand conferring greater strength on the hydrogen bonds that connect complementary strands into a double helix and so confer enhanced stability. Beyond a…

Soft Condensed Matter · Physics 2016-04-25 Arghya Maity , Amar Singh , Navin Singh

The interrelation between disorder and interactions in two dimensional electron liquid is studied beyond weak coupling perturbation theory. Strong repulsion significantly reduces the electronic density of states on the Fermi level. This…

Disordered Systems and Neural Networks · Physics 2007-05-23 B. Rosenstein , Tran Minh-Tien

Recently, Roht et al. [J. Contam. Hydrol. 145, 10-16 (2013)] observed that the presence of suspended non-Brownian macroscopic particles decreased the dispersivity of a passive solute, for a pressure-driven flow in a narrow parallel-plates…

Fluid Dynamics · Physics 2015-03-17 A. Boschan , M. A. Aguirre , G. Gauthier

Ion transport is the major determining factor of salinity tolerance in plants. A simple scheme of a plant cell with ion fluxes provides basic understanding of ion transport and the corresponding changes of ion concentrations under salinity.…

Subcellular Processes · Quantitative Biology 2014-11-07 Vadim Volkov

Solute-surface interactions have garnered considerable interest in recent years as a novel control mechanism for driving unique fluid dynamics and particle transport with potential applications in fields such as biomedicine, the development…

Fluid Dynamics · Physics 2023-05-05 Jian Teng , Bhargav Rallabandi , Jesse T. Ault
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