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Pre-trained language models (PLMs) like BERT are being used for almost all language-related tasks, but interpreting their behavior still remains a significant challenge and many important questions remain largely unanswered. In this work,…

Bilingual word embeddings have been widely used to capture the similarity of lexical semantics in different human languages. However, many applications, such as cross-lingual semantic search and question answering, can be largely benefited…

Electronic Health Records are large repositories of valuable clinical data, with a significant portion stored in unstructured text format. This textual data includes clinical events (e.g., disorders, symptoms, findings, medications and…

We propose an approach for adapting the DeBERTa model for electronic health record (EHR) tasks using domain adaptation. We pretrain a small DeBERTa model on a dataset consisting of MIMIC-III discharge summaries, clinical notes, radiology…

In this research, we explored the improvement in terms of multi-class disease classification via pre-trained language models over Medical-Abstracts-TC-Corpus that spans five medical conditions. We excluded non-cancer conditions and examined…

The rise of large language models (LLMs) has marked a pivotal shift in the field of natural language processing (NLP). LLMs have revolutionized a multitude of domains, and they have made a significant impact in the medical field. Large…

Biomedical concept normalization links concept mentions in texts to a semantically equivalent concept in a biomedical knowledge base. This task is challenging as concepts can have different expressions in natural languages, e.g.…

Large language models (LLMs) such as GPT-4o and o1 have demonstrated strong performance on clinical natural language processing (NLP) tasks across multiple medical benchmarks. Nonetheless, two high-impact NLP tasks - structured tabular…

This technical report introduces a Named Clinical Entity Recognition Benchmark for evaluating language models in healthcare, addressing the crucial natural language processing (NLP) task of extracting structured information from clinical…

In this paper, we introduce the range of oBERTa language models, an easy-to-use set of language models which allows Natural Language Processing (NLP) practitioners to obtain between 3.8 and 24.3 times faster models without expertise in…

Large Language Models (LLMs) demonstrate exceptional capabilities in a multitude of NLP tasks. However, the efficacy of such models to languages other than English is often limited. Prior works have shown that encoder-only models such as…

Medical Vision Language Pretraining (VLP) has recently emerged as a promising solution to the scarcity of labeled data in the medical domain. By leveraging paired/unpaired vision and text datasets through self-supervised learning, models…

While large general-purpose Transformer-based encoders excel at general language understanding, their performance diminishes in specialized domains like manufacturing due to a lack of exposure to domain-specific terminology and semantics.…

Natural language processing (NLP) models trained on people-generated data can be unreliable because, without any constraints, they can learn from spurious correlations that are not relevant to the task. We hypothesize that enriching models…

Natural language processing (NLP) has been traditionally applied to medicine, and generative large language models (LLMs) have become prominent recently. However, the differences between them across different medical tasks remain…

Biomedical text mining is becoming increasingly important as the number of biomedical documents and web data rapidly grows. Recently, word representation models such as BERT has gained popularity among researchers. However, it is difficult…

Recent advancements in language models and pre-trained language models like BERT and RoBERTa have revolutionized natural language processing, enabling a deeper understanding of human-like language. In this paper, we explore enhancing…

Recent breakthroughs of pretrained language models have shown the effectiveness of self-supervised learning for a wide range of natural language processing (NLP) tasks. In addition to standard syntactic and semantic NLP tasks, pretrained…

Pre-trained models such as BERT are widely used in NLP tasks and are fine-tuned to improve the performance of various NLP tasks consistently. Nevertheless, the fine-tuned BERT model trained on our protocol corpus still has a weak…

We present and make available pre-trained language models (Phraser, Word2Vec, Doc2Vec, FastText, and BERT) for the Brazilian legal language, a Python package with functions to facilitate their use, and a set of demonstrations/tutorials…