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Related papers: Retrosynthesis Prediction with Local Template Retr…

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k-Nearest-Neighbor Machine Translation (kNN-MT) becomes an important research direction of NMT in recent years. Its main idea is to retrieve useful key-value pairs from an additional datastore to modify translations without updating the NMT…

Computation and Language · Computer Science 2022-10-18 Hui Jiang , Ziyao Lu , Fandong Meng , Chulun Zhou , Jie Zhou , Degen Huang , Jinsong Su

Recurrent Neural Networks (RNNs) have emerged as an interesting alternative to conventional material modeling approaches, particularly for nonlinear path dependent materials. Remarkable computational enhancements are obtained using RNNs…

Computational Engineering, Finance, and Science · Computer Science 2024-09-05 Petter Uvdal , Mohsen Mirkhalaf

Within the context of studies for novel measurement solutions for future particle physics experiments, we developed a performant kNN-based regressor to infer the energy of highly-relativistic muons from the pattern of their radiation losses…

High Energy Physics - Experiment · Physics 2022-03-08 T. Dorigo , Sofia Guglielmini , Jan Kieseler , Lukas Layer , Giles C. Strong

A deep neural network (DNN) model consisting of two hidden layers was proposed for predicting the immediate environments of specific atoms based on X-ray absorption near-edge spectra (XANES). The output layer of the DNN can be adjusted to…

Computational Physics · Physics 2019-05-13 Liang Li , Mindren Lu , Maria K. Y. Chan

The pre-trained foundation models (PFMs) have become essential for facilitating large-scale multimodal learning. Researchers have effectively employed the ``pre-train, prompt, and predict'' paradigm through prompt learning to induce…

Computation and Language · Computer Science 2025-12-24 Xiang Chen , Yixin Ou , Quan Feng , Lei Li , Piji Li , Haibo Ye , Sheng-Jun Huang , Shuofei Qiao , Shumin Deng , Huajun Chen , Ningyu Zhang

This study presents a novel model for invertible sentence embeddings using a residual recurrent network trained on an unsupervised encoding task. Rather than the probabilistic outputs common to neural machine translation models, our…

Computation and Language · Computer Science 2023-04-07 Jeremy Wilkerson

Computer-assisted synthesis planning aims to help chemists find better reaction pathways faster. Finding viable and short pathways from sugar molecules to value-added chemicals can be modeled as a retrosynthesis planning problem with a…

Other Computer Science · Computer Science 2019-11-19 Peihong Jiang , Hieu Doan , Sandeep Madireddy , Rajeev Surendran Assary , Prasanna Balaprakash

Deep neural networks (DNNs) are powerful learning machines that have enabled breakthroughs in several domains. In this work, we introduce a new retrospective loss to improve the training of deep neural network models by utilizing the prior…

Computer Vision and Pattern Recognition · Computer Science 2020-06-25 Surgan Jandial , Ayush Chopra , Mausoom Sarkar , Piyush Gupta , Balaji Krishnamurthy , Vineeth Balasubramanian

With the recent advances in machine learning for quantum chemistry, it is now possible to predict the chemical properties of compounds and to generate novel molecules. Existing generative models mostly use a string- or graph-based…

Biomolecules · Quantitative Biology 2020-10-14 Vitali Nesterov , Mario Wieser , Volker Roth

The use of machine learning algorithms is an attractive way to produce very fast detector simulations for scattering reactions that can otherwise be computationally expensive. Here we develop a factorised approach where we deal with each…

Data Analysis, Statistics and Probability · Physics 2022-07-26 D. Darulis , R. Tyson , D. G. Ireland , D. I. Glazier , B. McKinnon , P. Pauli

We present a learning-based framework, recurrent transformer network (RTN), to restore heavily degraded old films. Instead of performing frame-wise restoration, our method is based on the hidden knowledge learned from adjacent frames that…

Computer Vision and Pattern Recognition · Computer Science 2022-04-01 Ziyu Wan , Bo Zhang , Dongdong Chen , Jing Liao

Deep neural networks (DNNs) have been used to create models for many complex analysis problems like image recognition and medical diagnosis. DNNs are a popular tool within machine learning due to their ability to model complex patterns and…

Machine Learning · Computer Science 2024-05-14 Parth Patil , Ben Boardley , Jack Gardner , Emily Loiselle , Deerajkumar Parthipan

The disconnect between AI-generated molecules with desirable properties and their synthetic feasibility remains a critical bottleneck in computational discovery of drugs and materials. While generative AI has accelerated the proposal of…

Chemical Physics · Physics 2025-11-25 Shuan Chen , Gunwook Nam , Alan Aspuru-Guzik , Yousung Jung

K-Nearest Neighbor Neural Machine Translation (kNN-MT) successfully incorporates external corpus by retrieving word-level representations at test time. Generally, kNN-MT borrows the off-the-shelf context representation in the translation…

Computation and Language · Computer Science 2023-09-20 Qiang Wang , Rongxiang Weng , Ming Chen

Faithful energy reconstruction is foundational for precision neutrino experiments like DUNE, but is hindered by uncertainties in our understanding of neutrino--nucleus interactions. Here, we demonstrate that dense neural networks are very…

High Energy Physics - Phenomenology · Physics 2025-04-22 Joachim Kopp , Pedro Machado , Margot MacMahon , Ivan Martinez-Soler

Drug-Target binding Affinity (DTA) prediction is essential for drug discovery. Despite the application of deep learning methods to DTA prediction, the achieved accuracy remain suboptimal. In this work, inspired by the recent success of…

Biomolecules · Quantitative Biology 2024-07-23 Qizhi Pei , Lijun Wu , Zhenyu He , Jinhua Zhu , Yingce Xia , Shufang Xie , Rui Yan

Aims. With the large amount of molecular emission data from (sub)millimeter observatories and incoming James Webb Space Telescope infrared spectroscopy, access to fast forward models of the chemical composition of protoplanetary disks is of…

The reaction center consists of atoms in the product whose local properties are not identical to the corresponding atoms in the reactants. Prior studies on reaction center identification are mainly on semi-templated retrosynthesis methods.…

Machine Learning · Computer Science 2023-01-31 Zixun Lan , Zuo Zeng , Binjie Hong , Zhenfu Liu , Fei Ma

There is an intuitive analogy of an organic chemist's understanding of a compound and a language speaker's understanding of a word. Consequently, it is possible to introduce the basic concepts and analyze potential impacts of linguistic…

Machine Learning · Computer Science 2017-11-16 Philippe Schwaller , Theophile Gaudin , David Lanyi , Costas Bekas , Teodoro Laino

The problem of retrosynthetic planning can be framed as one player game, in which the chemist (or a computer program) works backwards from a molecular target to simpler starting materials though a series of choices regarding which reactions…

Machine Learning · Computer Science 2019-01-23 John S. Schreck , Connor W. Coley , Kyle J. M. Bishop
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