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This paper describes a method to efficiently retrieve protein database sequences similar to a query sequence, while allowing for significant numbers of mutations. We call this method SEQR for SEQuence Retrieval. This approach increases the…

Genomics · Quantitative Biology 2018-11-05 David I. Hurwitz , Lianyi Han , Lewis Y. Geer

Multiple Kernel Learning(MKL) on Support Vector Machines(SVMs) has been a popular front of research in recent times due to its success in application problems like Object Categorization. This success is due to the fact that MKL has the…

Machine Learning · Computer Science 2014-01-03 Dinesh Govindaraj , Raman Sankaran , Sreedal Menon , Chiranjib Bhattacharyya

The search task is one of the most difficult when it comes to execution speed, and reducing the latter is important both when working with large data and with small samples, if they need to be processed frequently and in a limited time.…

Quantum Physics · Physics 2025-04-24 Karina Zakharova

Parametric search has been widely used in geometric algorithms. Cole's improvement provides a way of saving a logarithmic factor in the running time over what is achievable using the standard method. Unfortunately, this improvement comes at…

Data Structures and Algorithms · Computer Science 2013-06-14 Michael T. Goodrich , Paweł Pszona

Noisy pairwise comparison feedback has been incorporated to improve the overall query complexity of interactively learning binary classifiers. The \textit{positivity comparison oracle} is used to provide feedback on which is more likely to…

Machine Learning · Computer Science 2020-10-29 Zhenghang Cui , Issei Sato

This paper provides a block coordinate descent algorithm to solve unconstrained optimization problems. In our algorithm, computation of function values or gradients is not required. Instead, pairwise comparison of function values is used.…

Machine Learning · Statistics 2014-09-16 Kota Matsui , Wataru Kumagai , Takafumi Kanamori

An algorithm for structured database searching is presented and used to solve the set partition problem. O(n) oracle calls are required in order to obtain a solution, but the probability that this solution is optimal decreases exponentially…

Quantum Physics · Physics 2007-05-23 Brian Murphy

In this paper, we address the problem of searching for semantically similar images from a large database. We present a compact coding approach, supervised quantization. Our approach simultaneously learns feature selection that linearly…

Computer Vision and Pattern Recognition · Computer Science 2019-02-05 Xiaojuan Wang , Ting Zhang , Guo-Jun Q , Jinhui Tang , Jingdong Wang

We consider the problem of sorting $n$ items, given the outcomes of $m$ pre-existing comparisons. We present a simple and natural deterministic algorithm that runs in $O(m + \log T)$ time and does $O(\log T)$ comparisons, where $T$ is the…

Data Structures and Algorithms · Computer Science 2026-05-06 Bernhard Haeupler , Richard Hladík , John Iacono , Vaclav Rozhon , Robert Tarjan , Jakub Tětek

We propose Coactive Learning as a model of interaction between a learning system and a human user, where both have the common goal of providing results of maximum utility to the user. At each step, the system (e.g. search engine) receives a…

Machine Learning · Computer Science 2015-03-20 Pannaga Shivaswamy , Thorsten Joachims

Interactions between search and recommendation have recently attracted significant attention, and several studies have shown that many potential applications involve with a joint problem of producing recommendations to users with respect to…

Information Retrieval · Computer Science 2014-12-15 Lu Yu , Junming Huang , Chuang Liu , Zike Zhang

Text clustering aims to automatically partition a collection of documents into coherent groups based on their linguistic features. In the literature, this task is formulated either as metric clustering over pre-trained text embeddings or as…

Computation and Language · Computer Science 2025-08-22 Hongtao Wang , Taiyan Zhang , Renchi Yang , Jianliang Xu

Time-series classification is an important problem for the data mining community due to the wide range of application domains involving time-series data. A recent paradigm, called shapelets, represents patterns that are highly predictive…

Machine Learning · Computer Science 2015-03-12 Josif Grabocka , Martin Wistuba , Lars Schmidt-Thieme

We study the active learning problem of top-$k$ ranking from multi-wise comparisons under the popular multinomial logit model. Our goal is to identify the top-$k$ items with high probability by adaptively querying sets for comparisons and…

Data Structures and Algorithms · Computer Science 2017-08-01 Xi Chen , Yuanzhi Li , Jieming Mao

In the multitarget Grover algorithm, we are given an unstructured N-element list of objects S_i containing a T-element subset tau and function f, called an oracle, such that f(S_i)=1 if S_i is in tau, otherwise f(S_i) = 0. By using quantum…

Quantum Physics · Physics 2013-05-29 Keith Kastella , Richard Freeling

We propose a couple of oracle construction methods for quantum pattern matching. We in turn show that one of the construct can be used with the Grover's search algorithm for exact and partial pattern matching, deterministically. The other…

Quantum Physics · Physics 2021-02-24 Vikram Menon , Ayan Chattopadhyay

This work studies the applicability of expensive external oracles such as large language models in answering top-k queries over predicted scores. Such scores are incurred by user-defined functions to answer personalized queries over…

Databases · Computer Science 2025-02-19 Sohrab Namazi Nia , Subhodeep Ghosh , Senjuti Basu Roy , Sihem Amer-Yahia

The paradigm shift from item-centric ranking to answer-centric synthesis is redefining the role of search engines. While recent industrial progress has applied generative techniques to closed-set item ranking in e-commerce, research and…

Computation and Language · Computer Science 2026-03-12 Wei Wu , Peilun Zhou , Liyi Chen , Qimeng Wang , Chengqiang Lu , Yan Gao , Yi Wu , Yao Hu , Hui Xiong

Many active learning and search approaches are intractable for large-scale industrial settings with billions of unlabeled examples. Existing approaches search globally for the optimal examples to label, scaling linearly or even…

Identifying cross-language plagiarism is challenging, especially for distant language pairs and sense-for-sense translations. We introduce the new multilingual retrieval model Cross-Language Ontology-Based Similarity Analysis (CL-OSA) for…

Computation and Language · Computer Science 2021-12-17 Johannes Stegmüller , Fabian Bauer-Marquart , Norman Meuschke , Terry Ruas , Moritz Schubotz , Bela Gipp
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