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Dynamic graphs are rife with higher-order interactions, such as co-authorship relationships and protein-protein interactions in biological networks, that naturally arise between more than two nodes at once. In spite of the ubiquitous…

Machine Learning · Computer Science 2021-02-09 Manohar Kaul , Masaaki Imaizumi

This survey article is devoted to general results in combinatorial enumeration. The first part surveys results on growth of hereditary properties of combinatorial structures. These include permutations, ordered and unordered graphs and…

Combinatorics · Mathematics 2008-04-01 Martin Klazar

Bipartite graphs are a prevalent modeling tool for real-world networks, capturing interactions between vertices of two different types. Within this framework, bicliques emerge as crucial structures when studying dense subgraphs: they are…

Data Structures and Algorithms · Computer Science 2024-05-27 Alexis Baudin , Clémence Magnien , Lionel Tabourier

An important application of distance geometry to biochemistry studies the embeddings of the vertices of a weighted graph in the three-dimensional Euclidean space such that the edge weights are equal to the Euclidean distances between…

Computational Geometry · Computer Science 2011-03-08 Leo Liberti , Carlile Lavor , Benoit Masson , Antonio Mucherino

The enumeration of maps and the study of uniform random maps have been classical topics of combinatorics and statistical physics ever since the seminal work of Tutte in the sixties. Following the bijective approach initiated by Cori and…

Combinatorics · Mathematics 2010-06-29 Guillaume Chapuy , Michel Marcus , Gilles Schaeffer

For the set of graphs with a given degree sequence, consisting of any number of $2's$ and $1's$, and its subset of bipartite graphs, we characterize the optimal graphs who maximize and minimize the number of $m$-matchings. We find the…

Combinatorics · Mathematics 2008-01-16 S. Friedland , E. Krop , K. Markström

In 2008 Amanatidis, Green and Mihail introduced the Joint Degree Matrix (JDM) model to capture the fundamental difference in assortativity of networks in nature studied by the physical and life sciences and social networks studied in the…

Combinatorics · Mathematics 2017-07-05 Péter L. Erdős , Stephen G. Hartke , Leo van Iersel , István Miklós

Let a and b be two positive integers. A culminating path is a path of Z^2 that starts from (0,0), consists of steps (1,a) and (1,-b), stays above the x-axis and ends at the highest ordinate it ever reaches. These paths were first…

Combinatorics · Mathematics 2008-10-31 Mireille Bousquet-Mélou , Yann Ponty

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

RNA-Seq technology offers new high-throughput ways for transcript identification and quantification based on short reads, and has recently attracted great interest. The problem is usually modeled by a weighted splicing graph whose nodes…

Quantitative Methods · Quantitative Biology 2013-08-02 Alexandru I. Tomescu , Anna Kuosmanen , Romeo Rizzi , Veli Mäkinen

Hypermaps were introduced as an algebraic tool for the representation of embeddings of graphs on an orientable surface. Recently a bijection was given between hypermaps and indecomposable permutations; this sheds new light on the subject by…

Combinatorics · Mathematics 2008-12-03 Robert Cori

We describe a general purpose algorithm for counting simple cycles and simple paths of any length $\ell$ on a (weighted di)graph on $N$ vertices and $M$ edges, achieving a time complexity of $O\left(N+M+\big(\ell^\omega+\ell\Delta\big)…

Data Structures and Algorithms · Computer Science 2019-09-12 Pierre-Louis Giscard , Nils Kriege , Richard C. Wilson

We study enumerative questions on the moduli space $\mathcal{M}(L)$ of hyperplane arrangements with a given intersection lattice $L$. Mn\"ev's universality theorem suggests that these moduli spaces can be arbitrarily complicated; indeed it…

Algebraic Geometry · Mathematics 2014-09-23 Thomas Paul , Will Traves , Max Wakefield

In 2003, Deutsch and Elizalde defined a family of bijective maps between the set of Dyck paths to itself which is induced by some particular permutations. In this paper, we extend the construction of the maps by allowing the permutation to…

Combinatorics · Mathematics 2023-01-02 Kevin Limanta , Hopein Christofen Tang , Yozef Tjandra

A vertex ordering of a graph $G$ is a bijection $\pi\colon\{1,\dots,|V(G)|\}\to V(G)$. It is successive if the induced subgraph $G[v_{\pi(1)},\dots,v_{\pi(k)}]$ is connected for each $k$. Lixing Fang, Hao Huang, J\'anos Pach, G\'abor…

Combinatorics · Mathematics 2023-10-06 Boon Suan Ho

For lattice paths in strips which begin at $(0,0)$ and have only up steps $U: (i,j) \rightarrow (i+1,j+1)$ and down steps $D: (i,j)\rightarrow (i+1,j-1)$, let $A_{n,k}$ denote the set of paths of length $n$ which start at $(0,0)$, end on…

Combinatorics · Mathematics 2020-04-03 Nancy S. S. Gu , Helmut Prodinger

Finding a maximum cardinality common independent set in two matroids (also known as \textsc{Matroid Intersection}) is a classical combinatorial optimization problem, which generalizes several well-known problems, such as finding a maximum…

Combinatorics · Mathematics 2024-02-12 Yasuaki Kobayashi , Kazuhiro Kurita , Kunihiro Wasa

In this paper, we consider the problems of enumerating minimal vertex covers and minimal dominating sets with capacity and/or connectivity constraints. We develop polynomial-delay enumeration algorithms for these problems on bounded-degree…

Data Structures and Algorithms · Computer Science 2024-11-15 Yasuaki Kobayashi , Kazuhiro Kurita , Kevin Mann , Yasuko Matsui , Hirotaka Ono

A vertex ranking of a graph is an assignment of ranks (or colors) to the vertices of the graph, in such a way that any simple path connecting two vertices of equal rank, must contain a vertex of a higher rank. In this paper we study a…

Combinatorics · Mathematics 2016-09-21 Ilan Karpas , Ofer Neiman , Shakhar Smorodinsky

We study combinatorial aspects of the sandpile model on wheel and fan graphs, seeking bijective characterisations of the model's recurrent configurations on these families. For wheel graphs, we exhibit a bijection between these recurrent…

Combinatorics · Mathematics 2023-03-30 Thomas Selig
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