Related papers: Bijective enumeration of general stacks
The enumeration degrees of sets of natural numbers can be identified with the degrees of difficulty of enumerating neighborhood bases of points in a universal second-countable $T_0$-space (e.g. the $\omega$-power of the Sierpi\'nski space).…
A bargraph is a self-avoiding lattice path with steps $U=(0,1)$, $H=(1,0)$ and $D=(0,-1)$ that starts at the origin and ends on the $x$-axis, and stays strictly above the $x$-axis everywhere except at the endpoints. Bargraphs have been…
A unicellular map is the embedding of a connected graph in a surface in such a way that the complement of the graph is a topological disk. In this paper we present a bijective link between unicellular maps on a non-orientable surface and…
It is a classical result of Stein and Waterman that the asymptotic number of RNA secondary structures is $1.104366 \cdot n^{-3/2} \cdot 2.618034^n$. Motivated by the kinetics of RNA secondary structure formation, we are interested in…
Plane increasing trees are rooted labeled trees embedded into the plane such that the sequence of labels is increasing on any branch starting at the root. Relaxed binary trees are a subclass of unlabeled directed acyclic graphs. We…
In this paper we consider the problem of computing an mRNA sequence of maximal similarity for a given mRNA of secondary structure constraints, introduced by Backofen et al. in [BNS02] denoted as the MRSO problem. The problem is known to be…
Let $G$ be a connected undirected graph on $n$ vertices with no loops but possibly multiedges. Given an arithmetical structure $(\textbf{r}, \textbf{d})$ on $G$, we describe a construction which associates to it a graph $G'$ on $n-1$…
A derivative structure is a nonequivalent substitutional atomic configuration derived from a given primitive cell. The enumeration of derivative structures plays an essential role in searching for the ground states in multicomponent…
We give a combinatorial proof of a recent geometric result of Farkas and Lian on linear series on curves with prescribed incidence conditions. The result states that the expected number of degree-$d$ morphisms from a general genus $g$,…
Binary relations are one of the standard ways to encode, characterise and reason about graphs. Relation algebras provide equational axioms for a large fragment of the calculus of binary relations. Although relations are standard tools in…
Determining the maximum number of edges in an intersecting hypergraph on a fixed ground set under additional constraints is one of the central topics in extremal combinatorics. In contrast, there are few results on analogous problems…
Motzkin paths are simple yet important combinatorial objects. In this paper, we consider families of Motzkin paths with restrictions on peak heights, valley heights, upward-run lengths, downward-run lengths, and flat-run lengths. This paper…
For a subclass of matchings, set partitions, and permutations, we describe a direct bijection involving only arc annotated diagrams that not only interchanges maximum nesting and crossing numbers, but also all refinements of crossing and…
Selecting a connected subnetwork enriched in individually important vertices is an approach commonly used in many areas of bioinformatics, including analysis of gene expression data, mutations, metabolomic profiles and others. It can be…
Valid hook configurations are combinatorial objects used to understand West's stack-sorting map. We extend existing bijections corresponding valid hook configurations to intervals in partial orders on Motzkin paths. To enumerate valid hook…
With this work we aim to show how Mathematica can be a useful tool to investigate properties of combinatorial structures. Specifically, we will face enumeration problems on independent subsets of powers of paths and cycles, trying to…
The Gene or DNA sequence in every cell does not control genetic properties on its own; Rather, this is done through translation of DNA into protein and subsequent formation of a certain 3D structure. The biological function of a protein is…
The Catalan numbers count many classes of combinatorial objects. The most emblematic such objects are probably the Dyck walks and the binary trees, and, whenever another class of combinatorial objects is counted by the Catalan numbers, it…
Affordable, high-quality whole-genome assemblies have made it possible to construct rich pangenomes that capture haplotype diversity across many species. As these datasets grow, they motivate the development of specialized techniques…
Quasi-cliques are dense incomplete subgraphs of a graph that generalize the notion of cliques. Enumerating quasi-cliques from a graph is a robust way to detect densely connected structures with applications to bio-informatics and social…