Related papers: Bijective enumeration of general stacks
Enumerative studies of RNA secondary structures were initiated four decades ago by Waterman and his coworkers. Since then, RNA secondary structures have been explored according to many different structural characteristics, for instance,…
Given a network and a subset of interesting vertices whose identities are only partially known, the vertex nomination problem seeks to rank the remaining vertices in such a way that the interesting vertices are ranked at the top of the…
Enumeration of all combinatorial types of point configurations and polytopes is a fundamental problem in combinatorial geometry. Although many studies have been done, most of them are for 2-dimensional and non-degenerate cases. Finschi and…
The enumeration of combinatorial classes of the complex polynomial vector fields in C presented in [Dia13] is extended here to a closed form enumeration of combinatorial classes for degree d polynomial vector fields up to rotations of…
We find a bijection between bi-banded paths and peak-counting paths, applying to two classes of lattice paths including Dyck paths. Thus we find a new interpretation of Narayana numbers as coefficients of weight polynomials enumerating…
In this paper, we survey some properties, encoding, and bijections involving combinatorial maps, double occurrence words, and chord diagrams. We particularly study quasi-trees from a purely combinatorial point of view and derive a…
We prove a general multi-dimensional central limit theorem for the expected number of vertices of a given degree in the family of planar maps whose vertex degrees are restricted to an arbitrary (finite or infinite) set of positive integers…
This contribution summarizes recent work of the authors that combines methods from dynamical systems theory (discrete Painlev\'e equations) and asymptotic analysis of orthogonal polynomial recurrences, to address long-standing questions in…
For a connected graph, a vertex separator is a set of vertices whose removal creates at least two components. A vertex separator $S$ is minimal if it contains no other separator as a strict subset and a minimum vertex separator is a minimal…
A class of countable infinite graphs with unbounded vertex degree is considered. In these graphs, the vertices of large degree `repel' each other, which means that the path distance between two such vertices cannot be smaller than a certain…
We consider maps on genus-$g$ surfaces with $n$ (labeled) faces of prescribed even degrees. It is known since work of Norbury that, if one disallows vertices of degree one, the enumeration of such maps is related to the counting of lattice…
In this paper we study partitions whose successive ranks belong to a given set. We enumerate such partitions while keeping track of the number of parts, the largest part, the side of the Durfee square, and the height of the Durfee…
Protein contacts contain important information for protein structure and functional study, but contact prediction from sequence information remains very challenging. Recently evolutionary coupling (EC) analysis, which predicts contacts by…
We exhibit a bijection between central Delannoy $n$-paths, that is, lattice paths from the origin to $(n,n)$ with steps $E=(1,0), \,N=(0,1),\,D=(1,1)$ and the lattice paths from the origin to $(n+1,n)$ where the only restriction on the…
The degree sequence optimization problem is to find a subgraph of a given graph which maximizes the sum of given functions evaluated at the subgraph degrees. Here we study this problem by replacing degree sequences, via suitable nonlinear…
We consider a sorting machine consisting of two stacks in series where the first stack has the added restriction that entries in the stack must be in decreasing order from top to bottom. The class of permutations sortable by this machine…
Dyck paths having height at most $h$ and without valleys at height $h-1$ are combinatorially interpreted by means of 312-avoding permutations with some restrictions on their \emph{left-to-right maxima}. The results are obtained by analyzing…
Biological networks provide insight into the complex organization of biological processes in a cell at the system level. They are an effective tool for understanding the comprehensive map of functional interactions, finding the functional…
Enumerating all 3-manifold triangulations of a given size is a difficult but increasingly important problem in computational topology. A key difficulty for enumeration algorithms is that most combinatorial triangulations must be discarded…
The tree-depth problem can be seen as finding an elimination tree of minimum height for a given input graph $G$. We introduce a bicriteria generalization in which additionally the width of the elimination tree needs to be bounded by some…