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In permutation inversion, we are given a permutation $\pi : [N] \rightarrow [N]$, and want to prepare some advice of size $S$, such that we can efficiently invert any image in time $T$. This is a fundamental cryptographic problem with…
We generalize the tree doubling and Christofides algorithm, the two most common approximations for TSP, to parameterized approximations for ATSP. The parameters we consider for the respective parameterizations are upper bounded by the…
A wide range of applications, most notably in comparative genomics, involve the computation of a shortest sorting sequence of operations for a given permutation, where the set of allowed operations is fixed beforehand. Such sequences are…
A permutation array(or code) of length $n$ and distance $d$, denoted by $(n,d)$ PA, is a set of permutations $C$ from some fixed set of $n$ elements such that the Hamming distance between distinct members $\mathbf{x},\mathbf{y}\in C$ is at…
Detecting and counting copies of permutation patterns are fundamental algorithmic problems, with applications in the analysis of rankings, nonparametric statistics, and property testing tasks such as independence and quasirandomness…
One of the most natural optimization problems is the k-Set Packing problem, where given a family of sets of size at most k one should select a maximum size subfamily of pairwise disjoint sets. A special case of 3-Set Packing is the well…
In a previous work, B\'ona and Pantone studied permutations that avoided all but one pattern of length $k$ that began with a length $k-1$ increasing subsequence. We draw the connection between that idea and distant patterns, first discussed…
In this article, we study the problem of finding the longest common separable pattern between several permutations. We give a polynomial-time algorithm when the number of input permutations is fixed and show that the problem is NP-hard for…
We prove that the Minimum Distance Problem (MDP) on linear codes over any fixed finite field and parameterized by the input distance bound is W[1]-hard to approximate within any constant factor. We also prove analogous results for the…
We study the problem of computing the Fr\'echet distance between two polygonal curves under transformations. First, we consider translations in the Euclidean plane. Given two curves $\pi$ and $\sigma$ of total complexity $n$ and a threshold…
Discrete Morse theory has emerged as a powerful tool for a wide range of problems, including the computation of (persistent) homology. In this context, discrete Morse theory is used to reduce the problem of computing a topological invariant…
The Asymmetric Traveling Salesperson Path Problem (ATSPP) is one where, given an asymmetric metric space $(V,d)$ with specified vertices s and t, the goal is to find an s-t path of minimum length that passes through all the vertices in V.…
In Asymmetric A Priori TSP (with independent activation probabilities) we are given an instance of the Asymmetric Traveling Salesman Problem together with an activation probability for each vertex. The task is to compute a tour that…
A primary challenge in metagenomics is reconstructing individual microbial genomes from the mixture of short fragments created by sequencing. Recent work leverages the sparsity of the assembly graph to find $r$-dominating sets which enable…
Motivated by Bourque and Pevzner's simulation study of the parsimony method for studying genome rearrangement, Berestycki and Durrett used techniques from random graph theory to prove that the minimum parsimony distance after iterating the…
In this paper we study the parameterized complexity of two well-known permutation group problems which are NP-complete. 1. Given a permutation group G=<S>, subgroup of $S_n$, and a parameter $k$, find a permutation $\pi$ in G such that…
We consider the Travelling Salesman Problem with Neighbourhoods (TSPN) on the Euclidean plane ($\mathbb{R}^2$) and present a Polynomial-Time Approximation Scheme (PTAS) when the neighbourhoods are parallel line segments with lengths between…
We study a family of sorting match puzzles on grids, which we call permutation match puzzles. In this puzzle, each row and column of a $n \times n$ grid is labeled with an ordering constraint -- ascending (A) or descending (D) -- and the…
We find exact and asymptotic formulas for the number of pairs $(p,q)$ of $N$-cycles such that the all cycles of the product $p\cdot q$ have lengths from a given integer set. We then apply these results to prove a surprisingly high lower…
Recent work of Klivans, Stavropoulos, and Vasilyan initiated the study of testable learning with distribution shift (TDS learning), where a learner is given labeled samples from training distribution $\mathcal{D}$, unlabeled samples from…