Related papers: A barrier for further approximating Sorting By Tra…
The Spanning Tree Congestion (STC) problem is the following NP-hard problem: given a graph $G$, construct a spanning tree $T$ of $G$ minimizing its maximum edge congestion where the congestion of an edge $e\in T$ is the number of edges $uv$…
In this paper we study several variations of the \emph{pancake flipping problem}, which is also well known as the problem of \emph{sorting by prefix reversals}. We consider the variations in the sorting process by adding with prefix…
We introduce and study the \emph{Lattice Distortion Problem} (LDP). LDP asks how "similar" two lattices are. I.e., what is the minimal distortion of a linear bijection between the two lattices? LDP generalizes the Lattice Isomorphism…
We present a black-box reduction from the path version of the Traveling Salesman Problem (Path TSP) to the classical tour version (TSP). More precisely, we show that given an $\alpha$-approximation algorithm for TSP, then, for any $\epsilon…
We present a deterministic comparison-based algorithm that sorts sequences avoiding a fixed permutation $\pi$ in linear time, even if $\pi$ is a priori unkown. Moreover, the dependence of the multiplicative constant on the pattern $\pi$…
A permutation on an alphabet $ \Sigma $, is a sequence where every element in $ \Sigma $ occurs precisely once. Given a permutation $ \pi $= ($\pi_{1} $, $ \pi_{2} $, $ \pi_{3} $,....., $ \pi_{n} $) over the alphabet $ \Sigma $ =$\{ $0, 1,…
We study a combinatorial problem arising from microarrays synthesis. The synthesis is done by a light-directed chemical process. The objective is to minimize unintended illumination that may contaminate the quality of experiments.…
We consider the classic Set Cover problem in the data stream model. For $n$ elements and $m$ sets ($m\geq n$) we give a $O(1/\delta)$-pass algorithm with a strongly sub-linear $\tilde{O}(mn^{\delta})$ space and logarithmic approximation…
Dokos et. al. studied the distribution of two statistics over permutations $\mathfrak{S}_n$ of $\{1,2,\dots, n\}$ that avoid one or more length three patterns. A permutation $\sigma\in\mathfrak{S}_n$ contains a pattern…
We obtain asymptotically sharp error estimates for the consistency error of the Target Measure Diffusion map (TMDmap) (Banisch et al. 2020), a variant of diffusion maps featuring importance sampling and hence allowing input data drawn from…
The last decade brought a significant increase in the amount of data and a variety of new inference methods for reconstructing the detailed evolutionary history of various cancers. This brings the need of designing efficient procedures for…
This paper mainly investigates the circular open dimension problem (CODP), which consists of packing a set of circles of known radii into a strip of fixed width and unlimited length without overlapping. The objective is to minimize the…
We prove a "decomposition lemma" that allows us to count preimages of certain sets of permutations under West's stack-sorting map $s$. As a first application, we give a new proof of Zeilberger's formula for the number of 2-stack-sortable…
The mutational heterogeneity of tumours can be described with a tree representing the evolutionary history of the tumour. With noisy sequencing data there may be uncertainty in the inferred tree structure, while we may also wish to study…
The special purpose sorting operation, context directed swap (CDS), is an example of the block interchange sorting operation studied in prior work on permutation sorting. CDS has been postulated to model certain molecular sorting events…
There exists a bijection between one stack sortable permutations --permutations which avoid the pattern 231-- and planar trees. We define an edit distance between permutations which is coherent with the standard edit distance between trees.…
There is a deep connection between permutations and trees. Certain sub-structures of permutations, called sub-permutations, bijectively map to sub-trees of binary increasing trees. This opens a powerful tool set to study enumerative and…
We introduce a many-body topological invariant, called the topological disorder parameter (TDP), to characterize gapped quantum phases with global internal symmetry in (2+1)d. TDP is defined as the constant correction that appears in the…
A set of linearly constrained permutation matrices are proposed for constructing a class of permutation codes. Making use of linear constraints imposed on the permutation matrices, we can formulate a minimum Euclidian distance decoding…
Some of the most fundamental and well-studied graph parameters are the Diameter (the largest shortest paths distance) and Radius (the smallest distance for which a "center" node can reach all other nodes). The natural and important…