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A resource selection function is a model of the likelihood that an available spatial unit will be used by an animal, given its resource value. But how do we appropriately define availability? Step-selection analysis deals with this problem…

Quantitative Methods · Quantitative Biology 2015-12-08 Tal Avgar , Jonathan R. Potts , Mark A. Lewis , Mark S. Boyce

A multi-state version of an animal movement analysis method based on conditional logistic regression, called Step Selection Function (SSF), is proposed. In ecology SSF is developed from a comparison between the observed location of an…

Methodology · Statistics 2018-03-14 Aurélien Nicosia , Thierry Duchesne , Louis-Paul Rivest , Daniel Fortin

The two dominant approaches for the analysis of species-habitat associations in animals have been shown to reach divergent conclusions. Models fitted from the viewpoint of an individual (step selection functions), once scaled up, do not…

Quantitative Methods · Quantitative Biology 2018-06-27 Théo Michelot , Paul G. Blackwell , Jason Matthiopoulos

Step selection functions (SSFs) are flexible models to jointly describe animals' movement and habitat preferences. Their popularity has grown rapidly and extensions have been developed to increase their utility, including various…

Quantitative Methods · Quantitative Biology 2023-08-31 Théo Michelot , Natasha J. Klappstein , Jonathan R. Potts , John Fieberg

Continuous-time models have been developed to capture features of animal movement across temporal scales. In particular, one popular model is the continuous-time correlated random walk, in which the velocity of an animal is formulated as an…

Quantitative Methods · Quantitative Biology 2018-08-07 Théo Michelot , Paul G. Blackwell

Hidden Markov models (HMMs) are a versatile statistical framework commonly used in ecology to characterize behavioural patterns from animal movement data. In HMMs, the observed data depend on a finite number of underlying hidden states,…

Methodology · Statistics 2024-12-24 Fanny Dupont , Marianne Marcoux , Nigel Hussey , Marie Auger-Méthé

Habitat selection models are used in ecology to link the distribution of animals to environmental covariates, and identify habitats that are important for conservation. The most widely used models of this type, resource selection functions,…

Applications · Statistics 2018-10-26 Théo Michelot , Paul G. Blackwell , Simon Chamaillé-Jammes , Jason Matthiopoulos

Understanding species-habitat associations is fundamental to ecological sciences and for species conservation. Consequently, various statistical approaches have been designed to infer species-habitat associations. Due to their conceptual…

Hidden Markov models (HMMs) are popular tools for analysing animal behaviour based on movement, acceleration and other sensor data. In particular, these models allow to infer how the animal's decision-making process interacts with internal…

Methodology · Statistics 2025-12-22 Maya N. Vienken , Jan-Ole Koslik , Roland Langrock

The CSA-ES is an Evolution Strategy with Cumulative Step size Adaptation, where the step size is adapted measuring the length of a so-called cumulative path. The cumulative path is a combination of the previous steps realized by the…

Machine Learning · Computer Science 2013-02-19 Alexandre Chotard , Anne Auger , Nikolaus Hansen

State-space models are dynamical systems defined by a latent and an observed process. In ecology, stochastic state-space models in discrete time are most often used to describe the imperfectly observed dynamics of population sizes or animal…

Methodology · Statistics 2025-08-13 Frederic Barraquand , Julien Gibaud

Mechanistic modelling of animal movement is often formulated in discrete time despite problems with scale invariance, such as handling irregularly timed observations. A natural solution is to formulate in continuous time, yet uptake of this…

Applications · Statistics 2017-05-19 Alison Parton , Paul G. Blackwell

State-space models (SSMs) are a popular tool for modeling animal abundances. Inference difficulties for simple linear SSMs are well known, particularly in relation to simultaneous estimation of process and observation variances. Several…

Populations and Evolution · Quantitative Biology 2019-09-20 Leo Polansky , Ken B. Newman , Lara Mitchell

The CSA-ES is an Evolution Strategy with Cumulative Step size Adaptation, where the step size is adapted measuring the length of a so-called cumulative path. The cumulative path is a combination of the previous steps realized by the…

Machine Learning · Computer Science 2012-07-02 Alexandre Adrien Chotard , Anne Auger , Nikolaus Hansen

Markov community models have been applied to sessile organisms because such models facilitate estimation of transition probabilities by tracking species occupancy at many fixed observation points over multiple periods of time. Estimation of…

Applications · Statistics 2017-06-12 Keiichi Fukaya , J. Andrew Royle , Takehiro Okuda , Masahiro Nakaoka , Takashi Noda

The study of animal movement is challenging because it is a process modulated by many factors acting at different spatial and temporal scales. Several models have been proposed which differ primarily in the temporal conceptualization,…

Hidden Markov models (HMMs) have been used increasingly to understand how movement patterns of animals arise from behavioural states. An animal is assumed to transition between behavioural states through time, as described by transition…

Quantitative Methods · Quantitative Biology 2025-10-07 Théo Michelot , Emma Storey

Animal behavior is not driven simply by its current observations, but is strongly influenced by internal states. Estimating the structure of these internal states is crucial for understanding the neural basis of behavior. In principle,…

Artificial Intelligence · Computer Science 2019-02-05 Arun Kumar , Zhengwei Wu , Xaq Pitkow , Paul Schrater

Mouse-tracking recording techniques are becoming very attractive in experimental psychology. They provide an effective means of enhancing the measurement of some real-time cognitive processes involved in categorization, decision-making, and…

Applications · Statistics 2019-12-18 Antonio Calcagnì , Luigi Lombardi , Marco D'Alessandro

International large-scale assessments (ILSAs) play an important role in educational research and policy making. They collect valuable data on education quality and performance development across many education systems, giving countries the…

Methodology · Statistics 2023-11-16 Zilong Xie , Yunxiao Chen , Matthias von Davier , Haolei Weng
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